7la8
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==O6 variable lymphocyte receptor ectodomain bound to 3-HSO3-Gal-4GlcNAc== | ==O6 variable lymphocyte receptor ectodomain bound to 3-HSO3-Gal-4GlcNAc== | ||
- | <StructureSection load='7la8' size='340' side='right'caption='[[7la8]]' scene=''> | + | <StructureSection load='7la8' size='340' side='right'caption='[[7la8]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LA8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LA8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7la8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Petromyzon_marinus Petromyzon marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LA8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LA8 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7la8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7la8 OCA], [https://pdbe.org/7la8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7la8 RCSB], [https://www.ebi.ac.uk/pdbsum/7la8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7la8 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8965Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTN:BIOTIN'>BTN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SGA:O3-SULFONYLGALACTOSE'>SGA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7la8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7la8 OCA], [https://pdbe.org/7la8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7la8 RCSB], [https://www.ebi.ac.uk/pdbsum/7la8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7la8 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The terminal galactose residues of N- and O-glycans in animal glycoproteins are often sialylated and/or fucosylated, but sulfation, such as 3-O-sulfated galactose (3-O-SGal), represents an additional, but poorly understood modification. To this end, we have developed a novel sea lamprey variable lymphocyte receptor (VLR) termed O6 to explore 3-O-SGal expression. O6 was engineered as a recombinant murine IgG chimera and its specificity and affinity to the 3-O-SGal epitope was defined using a variety of approaches, including glycan and glycoprotein microarray analyses, isothermal calorimetry, ligand-bound crystal structure, FACS, and immunohistochemistry of human tissue macroarrays. 3-O-SGal is expressed on N-glycans of many plasma and tissue glycoproteins, but recognition by O6 is often masked by sialic acid and thus exposed by treatment with neuraminidase. O6 recognizes many human tissues, consistent with expression of the cognate sulfotransferases (GAL3ST-2 and GAL3ST-3). The availability of O6 for exploring 3-O-SGal expression could lead to new biomarkers for disease and aid in understanding the functional roles of terminal modifications of glycans and relationships between terminal sulfation, sialylation and fucosylation. | ||
+ | |||
+ | Novel lamprey antibody recognizes terminal sulfated galactose epitopes on mammalian glycoproteins.,McKitrick TR, Bernard SM, Noll AJ, Collins BC, Goth CK, McQuillan AM, Heimburg-Molinaro J, Herrin BR, Wilson IA, Cooper MD, Cummings RD Commun Biol. 2021 Jun 3;4(1):674. doi: 10.1038/s42003-021-02199-7. PMID:34083726<ref>PMID:34083726</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7la8" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Variable lymphocyte receptor 3D structures|Variable lymphocyte receptor 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
+ | [[Category: Petromyzon marinus]] | ||
[[Category: Bernard SM]] | [[Category: Bernard SM]] | ||
[[Category: Wilson IA]] | [[Category: Wilson IA]] |
Revision as of 15:42, 18 October 2023
O6 variable lymphocyte receptor ectodomain bound to 3-HSO3-Gal-4GlcNAc
|