7rgf
From Proteopedia
(Difference between revisions)
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==Protocadherin gammaC4 EC1-4 crystal structure disrupted trans interface== | ==Protocadherin gammaC4 EC1-4 crystal structure disrupted trans interface== | ||
| - | <StructureSection load='7rgf' size='340' side='right'caption='[[7rgf]]' scene=''> | + | <StructureSection load='7rgf' size='340' side='right'caption='[[7rgf]], [[Resolution|resolution]] 2.40Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RGF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7rgf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RGF FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rgf OCA], [https://pdbe.org/7rgf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rgf RCSB], [https://www.ebi.ac.uk/pdbsum/7rgf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rgf ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rgf OCA], [https://pdbe.org/7rgf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rgf RCSB], [https://www.ebi.ac.uk/pdbsum/7rgf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rgf ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q91XX0_MOUSE Q91XX0_MOUSE] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The stochastic expression of fewer than 60 clustered protocadherin (cPcdh) isoforms provides diverse identities to individual vertebrate neurons and a molecular basis for self-/nonself-discrimination. cPcdhs form chains mediated by alternating cis and trans interactions between apposed membranes, which has been suggested to signal self-recognition. Such a mechanism requires that cPcdh cis dimers form promiscuously to generate diverse recognition units, and that trans interactions have precise specificity so that isoform mismatches terminate chain growth. However, the extent to which cPcdh interactions fulfill these requirements has not been definitively demonstrated. Here, we report biophysical experiments showing that cPcdh cis interactions are promiscuous, but with preferences favoring formation of heterologous cis dimers. Trans homophilic interactions are remarkably precise, with no evidence for heterophilic interactions between different isoforms. A new C-type cPcdh crystal structure and mutagenesis data help to explain these observations. Overall, the interaction characteristics we report for cPcdhs help explain their function in neuronal self-/nonself-discrimination. | ||
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| + | How clustered protocadherin binding specificity is tuned for neuronal self-/nonself-recognition.,Goodman KM, Katsamba PS, Rubinstein R, Ahlsen G, Bahna F, Mannepalli S, Dan H, Sampogna RV, Shapiro L, Honig B Elife. 2022 Mar 7;11. pii: 72416. doi: 10.7554/eLife.72416. PMID:35253643<ref>PMID:35253643</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7rgf" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Cadherin 3D structures|Cadherin 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Mus musculus]] | ||
[[Category: Goodman KM]] | [[Category: Goodman KM]] | ||
[[Category: Honig B]] | [[Category: Honig B]] | ||
[[Category: Mannepalli S]] | [[Category: Mannepalli S]] | ||
[[Category: Shapiro L]] | [[Category: Shapiro L]] | ||
Revision as of 16:31, 18 October 2023
Protocadherin gammaC4 EC1-4 crystal structure disrupted trans interface
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