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| | <StructureSection load='5lhf' size='340' side='right'caption='[[5lhf]], [[Resolution|resolution]] 1.75Å' scene=''> | | <StructureSection load='5lhf' size='340' side='right'caption='[[5lhf]], [[Resolution|resolution]] 1.75Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5lhf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_kodakaraensis_(strain_kod1) Pyrococcus kodakaraensis (strain kod1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LHF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LHF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5lhf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LHF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trpF, TK0256 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69014 Pyrococcus kodakaraensis (strain KOD1)])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylanthranilate_isomerase Phosphoribosylanthranilate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.24 5.3.1.24] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lhf OCA], [https://pdbe.org/5lhf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lhf RCSB], [https://www.ebi.ac.uk/pdbsum/5lhf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lhf ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lhf OCA], [http://pdbe.org/5lhf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lhf RCSB], [http://www.ebi.ac.uk/pdbsum/5lhf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lhf ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/TRPF_THEKO TRPF_THEKO] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Phosphoribosylanthranilate isomerase]] | + | [[Category: Thermococcus kodakarensis KOD1]] |
| - | [[Category: Papageorgiou, A C]] | + | [[Category: Papageorgiou AC]] |
| - | [[Category: Perveen, S]] | + | [[Category: Perveen S]] |
| - | [[Category: Rashid, N]] | + | [[Category: Rashid N]] |
| - | [[Category: Isomerase]]
| + | |
| - | [[Category: Protein stability]]
| + | |
| - | [[Category: Tim barrel]]
| + | |
| - | [[Category: Tryptophan biosynthesis]]
| + | |
| Structural highlights
Function
TRPF_THEKO
Publication Abstract from PubMed
A phosphoribosyl anthranilate isomerase, TkTrpF, from Thermococcus kodakaraensis was expressed in Escherichia coli and purified to homogeneity. TkTrpF was crystallized and its structure was determined by molecular replacement in two different space groups (C2 and P1) using data to 1.85 and 1.75 A resolution, respectively. TkTrpF belongs to the class of TIM-barrel proteins. Structural comparison with other phosphoribosyl anthranilate isomerases (TrpFs) showed the highest structural similarity to Pyrococcus furiosus TrpF. Similarly to P. furiosus TrpF, TkTrpF is a monomer in solution, in contrast to other thermophilic enzymes, which exist as functional dimers. Although in space group P1 TkTrpF crystallizes with two molecules in the asymmetric unit, the interface is highly improbable in solution. Potential factors for the thermostability of TkTrpF were attributed to an increase in helical structure, an increased number of charged residues and an increase in the number of salt bridges.
Crystal structure of a phosphoribosyl anthranilate isomerase from the hyperthermophilic archaeon Thermococcus kodakaraensis.,Perveen S, Rashid N, Papageorgiou AC Acta Crystallogr F Struct Biol Commun. 2016 Nov 1;72(Pt 11):804-812. Epub 2016, Oct 24. PMID:27827353[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Perveen S, Rashid N, Papageorgiou AC. Crystal structure of a phosphoribosyl anthranilate isomerase from the hyperthermophilic archaeon Thermococcus kodakaraensis. Acta Crystallogr F Struct Biol Commun. 2016 Nov 1;72(Pt 11):804-812. Epub 2016, Oct 24. PMID:27827353 doi:http://dx.doi.org/10.1107/S2053230X16015223
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