Ribosome 3D structures

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Line 23: Line 23:
**[[6vu3]] – Ec30S + mRNA - Cryo EM<br />
**[[6vu3]] – Ec30S + mRNA - Cryo EM<br />
-
**[[3t1h]], [[3t1y]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br />
+
**[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br />
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br />
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br />
**[[4v8j]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br />
**[[4v8j]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br />
Line 56: Line 56:
**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] - Tt30S ribosomal subunit+16S rRNA+antibiotic<br />
**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] - Tt30S ribosomal subunit+16S rRNA+antibiotic<br />
-
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br />
+
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br />
**[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br />
**[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br />
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br />
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br />
Line 101: Line 101:
**[[6g5h]] - h40S ribosomal subunit + RACK1 - Cryo-EM<br />
**[[6g5h]] - h40S ribosomal subunit + RACK1 - Cryo-EM<br />
**[[6zlw]], [[6zmt]], [[6zn5]], [[6zoj]], [[6zok]], [[6zol]], [[7k5i]] - h40S + SARS Nsp1 - Cryo-EM<br />
**[[6zlw]], [[6zmt]], [[6zn5]], [[6zoj]], [[6zok]], [[6zol]], [[7k5i]] - h40S + SARS Nsp1 - Cryo-EM<br />
 +
**[[7tql]] - h40S ribosomal subunit + RACK1+ elF1A + eIF5B - Cryo EM<br />
**[[5vyc]] - h40S ribosomal subunit + DENR-MCT-1 - Cryo-EM<br />
**[[5vyc]] - h40S ribosomal subunit + DENR-MCT-1 - Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />
-
**[[6p4g]], [[6p4h]], [[6w2s]], [[6w2t]] - r40S ribosomal subunit + virus IRES – Cryo-EM<br />
+
**[[6p4g]], [[6p4h]], [[6w2s]], [[6w2t]], [[7syg]], [[7syh]], [[7syi]], [[7syj]], [[7syk]], [[7syl]], [[7sym]], [[7syn]], [[7syo]], [[7syp]], [[7syq]] - r40S ribosomal subunit + virus IRES – Cryo-EM<br />
**[[7jqb]] - r40S + SARS Nsp1 - Cryo-EM<br />
**[[7jqb]] - r40S + SARS Nsp1 - Cryo-EM<br />
**[[7jqc]] - r40S + SARS Nsp1 + virus IRES - Cryo-EM<br />
**[[7jqc]] - r40S + SARS Nsp1 + virus IRES - Cryo-EM<br />
-
**[[4bts]] - r40S ribosomal subunit+ 18SrRNA + EIF1 + EIF1A <br />
+
**[[4bts]] - r40S ribosomal subunit+ 18SrRNA + eIF1 + eIF1A <br />
 +
**[[8auv]] – RACK1 in 40S ribosome – tobacco - Cryo EM <br />
**[[6fai]], [[6y7c]] - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 - Cryo-EM<br />
**[[6fai]], [[6y7c]] - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 - Cryo-EM<br />
**[[6wdr]] - y40S ribosomal subunit + RACK1 + 20S rRNA + TSR1 - Cryo-EM<br />
**[[6wdr]] - y40S ribosomal subunit + RACK1 + 20S rRNA + TSR1 - Cryo-EM<br />
Line 115: Line 117:
**[[6zvi]] - y40S + Mbf1 – Cryo-EM<br />
**[[6zvi]] - y40S + Mbf1 – Cryo-EM<br />
**[[6nd4]] - y40S ribosomal subunit + SOF1 + IMP3 + MPP10 + BUD21 + NOP56 + NOP58 + NOP1 + SNU13 + RRP9 + FAF1 – Cryo-EM<br />
**[[6nd4]] - y40S ribosomal subunit + SOF1 + IMP3 + MPP10 + BUD21 + NOP56 + NOP58 + NOP1 + SNU13 + RRP9 + FAF1 – Cryo-EM<br />
 +
**[[8cbj]] – y40S pre-initiation complex + Otu2 – Cryo EM <br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[5xyi]] - Tv40S ribosomal subunit+ RACK1 – ''Trichomonas vaginalis'' - Cryo-EM<br />
**[[5xyi]] - Tv40S ribosomal subunit+ RACK1 – ''Trichomonas vaginalis'' - Cryo-EM<br />
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**[[6zon]], [[6zp4]] – h43S + SARS Nsp1 - Cryo_EM<br />
**[[6zon]], [[6zp4]] – h43S + SARS Nsp1 - Cryo_EM<br />
**[[6zce]], [[7a1g]] – y43S + ABCE-1 - Cryo_EM<br />
**[[6zce]], [[7a1g]] – y43S + ABCE-1 - Cryo_EM<br />
 +
**[[8cah]] – y43S pre-initiation complex + Otu2 – Cryo EM <br />
**[[7ase]] – Tc43S + helicase - Cryo_EM<br />
**[[7ase]] – Tc43S + helicase - Cryo_EM<br />
*48S preinitiation
*48S preinitiation
-
**[[6fec]], [[6ybs]], [[6ybw]], [[6zmw]] – h48S - Cryo_EM<br />
+
**[[6fec]], [[6ybs]], [[6ybw]], [[6zmw]], [[7qp6]], [[7qp7]] – h48S - Cryo_EM<br />
**[[6ybd]] – h48S + eIF3 - Cryo_EM<br />
**[[6ybd]] – h48S + eIF3 - Cryo_EM<br />
-
**[[6yal]], [[6yan]] – r48S + IF-3 + mRNA - Cryo_EM<br />
+
**[[6yal]], [[6yan]], [[7syv]] – r48S + IF-3 + mRNA - Cryo_EM<br />
**[[6yam]] – r48S + mRNA - Cryo_EM<br />
**[[6yam]] – r48S + mRNA - Cryo_EM<br />
 +
**[[7syt]], [[7syu]] - r48S translation initiation complex + IRES - Cryo EM<br />
 +
**[[7syr]], [[7sys]] - r48S translation initiation complex + IRES + eIF2 - Cryo EM<br />
 +
**[[7syw]], [[7syx]] - rRACK1 in 48S translation initiation complex + IRES + eIF5B - Cryo EM<br />
**[[6gsm]], [[6gsn]] – y48S - Cryo_EM<br />
**[[6gsm]], [[6gsn]] – y48S - Cryo_EM<br />
**[[6fyx]], [[6fyy]] – y48S + IF-5 - Cryo_EM<br />
**[[6fyx]], [[6fyy]] – y48S + IF-5 - Cryo_EM<br />
**[[6zu9]] – y48S + ABCE-1 - Cryo_EM<br />
**[[6zu9]] – y48S + ABCE-1 - Cryo_EM<br />
 +
**[[8cas]] – y48S pre-initiation complex + Otu2 – Cryo EM <br />
*50S subunit
*50S subunit
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*50S subunit + antibiotics
*50S subunit + antibiotics
-
**[[7a0r]], [[7a18]] - Dr50S + antibiotic<br />
+
**[[1z58]], [[4io9]], [[4ioa]], [[4ioc]],[[7a0r]], [[7a18]] - Dr50S + antibiotic<br />
**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit +general stress protein Ctc+ antibiotic<br />
**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit +general stress protein Ctc+ antibiotic<br />
-
**[[4io9]], [[4ioa]], [[4ioc]] - Dr50S subunit + antibiotics<br />
 
**[[6u48]] - Ec50S subunit + antibiotics<br />
**[[6u48]] - Ec50S subunit + antibiotics<br />
**[[6pc5]], [[6wyv]], [[6xz7]], [[6xza]], [[6xzb]] - Ec50S + antibiotics – Cryo EM<br />
**[[6pc5]], [[6wyv]], [[6xz7]], [[6xza]], [[6xzb]] - Ec50S + antibiotics – Cryo EM<br />
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**[[7jt1]], [[7jt3]] – EcRibosome + mRNA + ArfB-1 + ArfB-2 – Cryo-EM<br />
**[[7jt1]], [[7jt3]] – EcRibosome + mRNA + ArfB-1 + ArfB-2 – Cryo-EM<br />
**[[4v6f]], [[4v6g]] , [[4v87]], [[4v8b]] , [[4v8d]], [[4v8e]], [[4v9i]] – TtRibosome + mRNA<br />
**[[4v6f]], [[4v6g]] , [[4v87]], [[4v8b]] , [[4v8d]], [[4v8e]], [[4v9i]] – TtRibosome + mRNA<br />
 +
**[[4wu1]] – TtRibosome + mRNA + P-tRNA<br />
**[[4v4t]] – TtRibosome + stop codon<br />
**[[4v4t]] – TtRibosome + stop codon<br />
**[[4v4p]] – TtRibosome + mRNA operator<br />
**[[4v4p]] – TtRibosome + mRNA operator<br />
Line 284: Line 292:
**[[6ha1]] – BsRibosome + antibiotic – Cryo EM<br />
**[[6ha1]] – BsRibosome + antibiotic – Cryo EM<br />
**[[6s0x]], [[7p48]] – SaRibosome + antibiotic – Cryo EM<br />
**[[6s0x]], [[7p48]] – SaRibosome + antibiotic – Cryo EM<br />
-
**[[7m4w]], [[7m4z]], [[7ryh]] – AbRibosome + antibiotic - Cryo EM<br />
+
**[[7m4w]], [[7m4z]], [[7ryh]], [[7uw1]] – AbRibosome + antibiotic - Cryo EM<br />
**[[7m4x]], [[7m4y]], [[7ryf]], [[7ryg]] – AbRibosome + antibiotic + tRNA - Cryo EM<br />
**[[7m4x]], [[7m4y]], [[7ryf]], [[7ryg]] – AbRibosome + antibiotic + tRNA - Cryo EM<br />
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**[[7pjs]], [[7pjt]] – EcRibosome + tRNA – Cryo EM<br />
**[[7pjs]], [[7pjt]] – EcRibosome + tRNA – Cryo EM<br />
**[[7o1a]], [[7o19]], [[7oiz]], [[7p3k]] – EcRibosome + Tnac leader peptide – Cryo EM<br />
**[[7o1a]], [[7o19]], [[7oiz]], [[7p3k]] – EcRibosome + Tnac leader peptide – Cryo EM<br />
-
**[[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
+
**[[3j9y]], [[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
**[[6vwl]], [[6vwm]], [[6vwn]] – EcRibosome + HIV FSS – Cryo-EM<br />
**[[6vwl]], [[6vwm]], [[6vwn]] – EcRibosome + HIV FSS – Cryo-EM<br />
**[[7d6z]] – EcRibosome + peptide deformylase + trigger factor – Cryo-EM<br />
**[[7d6z]] – EcRibosome + peptide deformylase + trigger factor – Cryo-EM<br />
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*80S ribosome
*80S ribosome
-
**[[5t2c]], [[6ip5]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]] – hRibosome - Cryo-EM<br />
+
**[[5t2c]], [[6ip5]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]], [[7xnx]], [[7xny]], [[8g5y]], [[8g5z]], [[[8g60]], [8g6j]] – hRibosome - Cryo-EM<br />
**[[4v5z]] - dRibosome – dog - Cryo-EM <br />
**[[4v5z]] - dRibosome – dog - Cryo-EM <br />
-
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]] – rRibosome - Cryo-EM<br />
+
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br />
 +
**[[6hcf]], [[6q8y]], [[7zjw]] - r80S ribosome + mRNA - Cryo EM<br />
 +
**[[7o80]] - r80S ribosome + eRF1 + ABCE1 - Cryo EM<br />
 +
**[[8bhf]] - r80S ribosome + CNOT4 + CCR4-NOT - Cryo EM<br />
 +
**[[7oyd]] - r80S ribosome + Dap1b - Cryo EM<br />
**[[7cpu]], [[7cpv]] - mRibosome - Cryo-EM <br />
**[[7cpu]], [[7cpv]] - mRibosome - Cryo-EM <br />
**[[6xu6]], [[6xu7]], [[6xu8]] – DmRibosome - Cryo-EM<br />
**[[6xu6]], [[6xu7]], [[6xu8]] – DmRibosome - Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7r]], [[4v88]] – yRibosome <br />
**[[4v7r]], [[4v88]] – yRibosome <br />
-
**[[4v6i]], [[6t7t]], [[6t7i]], [[6t83]], [[6t4q]], [[6i7o]], [[6i7v]], [[6xiq]] – yRibosome - Cryo-EM<br />
+
**[[4v6i]], [[6t7i]], [[6t7t]], [[6t83]], [[6t4q]], [[6i7o]], [[6i7v]], [[6xiq]], [[7n8b]], [[7zux]], [[8ccs]], [[8cdl]], [[8cg8]], [[8cgn]] – yRibosome - Cryo-EM<br />
 +
**[[8cku]] – yRibosome + eEF2 - Cryo-EM<br />
**[[6zj3]] – Ribosome – Euglena gracilis - Cryo-EM<br />
**[[6zj3]] – Ribosome – Euglena gracilis - Cryo-EM<br />
**[[5t2a]] – LdRibosome – Leishmania donovani - Cryo-EM<br />
**[[5t2a]] – LdRibosome – Leishmania donovani - Cryo-EM<br />
Line 409: Line 422:
**[[6ole]], [[6olf]], [[6om0]], [[6om7]] – hRibosome + A-site tRNA + P-site tRNA + drug - Cryo-EM<br />
**[[6ole]], [[6olf]], [[6om0]], [[6om7]] – hRibosome + A-site tRNA + P-site tRNA + drug - Cryo-EM<br />
**[[7nfx]] – hRibosome + SRP + SRP receptor - Cryo-EM<br />
**[[7nfx]] – hRibosome + SRP + SRP receptor - Cryo-EM<br />
 +
**[[8g61]] - hRribosome + mRNA - Cryo EM<br />
**[[6fti]], [[6ftj]] - dRibosome + oligosaccharyltransferase + Sec61 - Cryo-EM <br />
**[[6fti]], [[6ftj]] - dRibosome + oligosaccharyltransferase + Sec61 - Cryo-EM <br />
**[[6ftg]] - dRibosome + OST - Cryo-EM <br />
**[[6ftg]] - dRibosome + OST - Cryo-EM <br />
Line 445: Line 459:
**[[7b7d]] – yRibosome + A-tRNA + P-tRNA + EF3 – Cryo EM<br />
**[[7b7d]] – yRibosome + A-tRNA + P-tRNA + EF3 – Cryo EM<br />
**[[7nrc]], [[7nrd]] – yRibosome + Gcn1 + A-tRNA + P-tRNA + eIF5A + Rbg2 + Gir2 – Cryo EM<br />
**[[7nrc]], [[7nrd]] – yRibosome + Gcn1 + A-tRNA + P-tRNA + eIF5A + Rbg2 + Gir2 – Cryo EM<br />
 +
**[[8evp]], [[8evs]], [[8evt]], [[8ewc]] – y80S ribosome + IRES – Cryo EM <br />
 +
**[[8bqd]], [[8bqx]] – y80S ribosome + Map1 – Cryo EM <br />
 +
**[[7mpi]], [[7mpj]] – y80S ribosome + Stm1 – Cryo EM <br />
 +
**[[7zw0]] – y80S ribosome + FAP – Cryo EM <br />
 +
**[[7zpq]], [[7zrs]], [[7zuw]] – y80S ribosome + RQT – Cryo EM <br />
 +
**[[8cdr]], [[8ceh]], [[8cf5]], [[8civ]], [[8cku]], [[8cmj]] – y80S ribosome + eEF2 – Cryo EM <br />
 +
**[[8eub]], [[8evq]], [[8evr]], [[8ewb]] – y80S ribosome + IRES + eEF2 + GDP – Cryo EM <br />
**[[6zu5]] – Ribosome + Lso2 – Paranosema locustae - Cryo-EM<br />
**[[6zu5]] – Ribosome + Lso2 – Paranosema locustae - Cryo-EM<br />
**[[4v7h]] - TlRibosome+P-site tRNA – Thermomyces lanuginosus<br />
**[[4v7h]] - TlRibosome+P-site tRNA – Thermomyces lanuginosus<br />

Revision as of 08:15, 22 October 2023

Updated on 22-October-2023 For a general description of the protein see Ribosome

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