This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wu5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:00, 25 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1wu5' size='340' side='right'caption='[[1wu5]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='1wu5' size='340' side='right'caption='[[1wu5]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1wu5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkhc Alkhc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WU5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WU5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1wu5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WU5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WU5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1wu4|1wu4]], [[1wu6|1wu6]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BH2105 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272558 ALKHC])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Oligosaccharide_reducing-end_xylanase Oligosaccharide reducing-end xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.156 3.2.1.156] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wu5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wu5 OCA], [https://pdbe.org/1wu5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wu5 RCSB], [https://www.ebi.ac.uk/pdbsum/1wu5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wu5 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wu5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wu5 OCA], [https://pdbe.org/1wu5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wu5 RCSB], [https://www.ebi.ac.uk/pdbsum/1wu5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wu5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/REOX_BACHD REOX_BACHD]] Hydrolyzes xylooligosaccharides with a degree of polymerization of greater than or equal to 3, releasing xylose from the reducing end. Only hydrolyzes the beta anomers of xylooligosaccharides, with inversion of anomeric configuration. Hydrolyzes the glucose and xylose-based trisaccharides where xylose is located at the -1 subsite, GXX, XXG and GXG. Does not hydrolyze xylan, chitosan, lichenan, curdlan or carboxymethylcellulose.<ref>PMID:15491996</ref>
+
[https://www.uniprot.org/uniprot/REOX_HALH5 REOX_HALH5] Hydrolyzes xylooligosaccharides with a degree of polymerization of greater than or equal to 3, releasing xylose from the reducing end. Only hydrolyzes the beta anomers of xylooligosaccharides, with inversion of anomeric configuration. Hydrolyzes the glucose and xylose-based trisaccharides where xylose is located at the -1 subsite, GXX, XXG and GXG. Does not hydrolyze xylan, chitosan, lichenan, curdlan or carboxymethylcellulose.<ref>PMID:15491996</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alkhc]]
+
[[Category: Alkalihalobacillus halodurans C-125]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Oligosaccharide reducing-end xylanase]]
+
[[Category: Fushinobu S]]
-
[[Category: Fushinobu, S]]
+
[[Category: Hidaka M]]
-
[[Category: Hidaka, M]]
+
[[Category: Honda Y]]
-
[[Category: Honda, Y]]
+
[[Category: Kitaoka M]]
-
[[Category: Kitaoka, M]]
+
[[Category: Shoun H]]
-
[[Category: Shoun, H]]
+
[[Category: Wakagi T]]
-
[[Category: Wakagi, T]]
+
-
[[Category: Glycoside hydrolase family 8]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of reducing-end-xylose releasing exo-oligoxylanase complexed with xylose

PDB ID 1wu5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1wu5"
Personal tools