This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yrx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 25 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2yrx' size='340' side='right'caption='[[2yrx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='2yrx' size='340' side='right'caption='[[2yrx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2yrx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_kaustophilus"_prickett_1928 "bacillus kaustophilus" prickett 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YRX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YRX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2yrx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus Geobacillus kaustophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YRX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YRX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yrw|2yrw]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylamine--glycine_ligase Phosphoribosylamine--glycine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.4.13 6.3.4.13] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yrx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yrx OCA], [https://pdbe.org/2yrx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yrx RCSB], [https://www.ebi.ac.uk/pdbsum/2yrx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yrx ProSAT], [https://www.topsan.org/Proteins/RSGI/2yrx TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yrx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yrx OCA], [http://pdbe.org/2yrx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yrx RCSB], [http://www.ebi.ac.uk/pdbsum/2yrx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yrx ProSAT], [http://www.topsan.org/Proteins/RSGI/2yrx TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5L3C7_GEOKA Q5L3C7_GEOKA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus kaustophilus prickett 1928]]
+
[[Category: Geobacillus kaustophilus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Phosphoribosylamine--glycine ligase]]
+
[[Category: Baba S]]
-
[[Category: Baba, S]]
+
[[Category: Kanagawa M]]
-
[[Category: Kanagawa, M]]
+
[[Category: Kawai G]]
-
[[Category: Kawai, G]]
+
[[Category: Kuramitsu S]]
-
[[Category: Kuramitsu, S]]
+
[[Category: Sampei G]]
-
[[Category: Structural genomic]]
+
[[Category: Yokoyama S]]
-
[[Category: Sampei, G]]
+
-
[[Category: Yokoyama, S]]
+
-
[[Category: Atp binding]]
+
-
[[Category: Gar synthetase]]
+
-
[[Category: Glycinamide ribonucleotide synthetase]]
+
-
[[Category: Ligase]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Purine nucleotide biosynthetic pathway]]
+
-
[[Category: Rsgi]]
+

Current revision

Crystal structure of GAR synthetase from Geobacillus kaustophilus

PDB ID 2yrx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2yrx"
Personal tools