8g05

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m (Protected "8g05" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 8g05 is ON HOLD
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==Cryo-EM structure of an orphan GPCR-Gi protein signaling complex==
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<StructureSection load='8g05' size='340' side='right'caption='[[8g05]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8g05]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8G05 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8G05 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLR:CHOLESTEROL'>CLR</scene>, <scene name='pdbligand=YI9:6-(octylamino)pyrimidine-2,4(3H,5H)-dione'>YI9</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8g05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8g05 OCA], [https://pdbe.org/8g05 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8g05 RCSB], [https://www.ebi.ac.uk/pdbsum/8g05 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8g05 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GPR84_HUMAN GPR84_HUMAN] Receptor for medium-chain free fatty acid (FFA) with carbon chain lengths of C9 to C14. Capric acid (C10:0), undecanoic acid (C11:0) and lauric acid (C12:0) are the most potent agonists. Not activated by short-chain and long-chain saturated and unsaturated FFAs. Activation by medium-chain free fatty acid is coupled to a pertussis toxin sensitive G(i/o) protein pathway. May have important roles in processes from fatty acid metabolism to regulation of the immune system.<ref>PMID:16966319</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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GPR84 is a unique orphan G protein-coupled receptor (GPCR) that can be activated by endogenous medium-chain fatty acids (MCFAs). The signaling of GPR84 is largely pro-inflammatory, which can augment inflammatory response, and GPR84 also functions as a pro-phagocytic receptor to enhance phagocytic activities of macrophages. In this study, we show that the activation of GPR84 by the synthetic agonist 6-OAU can synergize with the blockade of CD47 on cancer cells to induce phagocytosis of cancer cells by macrophages. We also determine a high-resolution structure of the GPR84-G(i) signaling complex with 6-OAU. This structure reveals an occluded binding pocket for 6-OAU, the molecular basis of receptor activation involving non-conserved structural motifs of GPR84, and an unusual G(i)-coupling interface. Together with computational docking and simulations studies, this structure also suggests a mechanism for the high selectivity of GPR84 for MCFAs and a potential routes of ligand binding and dissociation. These results provide a framework for understanding GPR84 signaling and developing new drugs targeting GPR84.
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Authors: Zhang, X., Wang, Y.J., Li, X., Liu, G.B., Gong, W.M., Zhang, C.
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Pro-phagocytic function and structural basis of GPR84 signaling.,Zhang X, Wang Y, Supekar S, Cao X, Zhou J, Dang J, Chen S, Jenkins L, Marsango S, Li X, Liu G, Milligan G, Feng M, Fan H, Gong W, Zhang C Nat Commun. 2023 Sep 14;14(1):5706. doi: 10.1038/s41467-023-41201-0. PMID:37709767<ref>PMID:37709767</ref>
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Description: Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Gong, W.M]]
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<div class="pdbe-citations 8g05" style="background-color:#fffaf0;"></div>
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[[Category: Li, X]]
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== References ==
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[[Category: Zhang, X]]
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<references/>
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[[Category: Liu, G.B]]
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__TOC__
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[[Category: Wang, Y.J]]
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</StructureSection>
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[[Category: Zhang, C]]
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Gong WM]]
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[[Category: Li X]]
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[[Category: Liu GB]]
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[[Category: Wang YJ]]
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[[Category: Zhang C]]
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[[Category: Zhang X]]

Revision as of 13:07, 1 November 2023

Cryo-EM structure of an orphan GPCR-Gi protein signaling complex

PDB ID 8g05

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