This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3d04

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:02, 1 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3d04' size='340' side='right'caption='[[3d04]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='3d04' size='340' side='right'caption='[[3d04]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3d04]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D04 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3d04]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D04 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SAK:(2S)-5-HYDROXY-2-(4-HYDROXYPHENYL)-7-METHOXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE'>SAK</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2gll|2gll]], [[3cf8|3cf8]], [[3cf9|3cf9]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SAK:(2S)-5-HYDROXY-2-(4-HYDROXYPHENYL)-7-METHOXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE'>SAK</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fabZ ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210 ATCC 43504])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d04 OCA], [https://pdbe.org/3d04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d04 RCSB], [https://www.ebi.ac.uk/pdbsum/3d04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d04 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d04 OCA], [https://pdbe.org/3d04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d04 RCSB], [https://www.ebi.ac.uk/pdbsum/3d04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d04 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/Q5G940_HELPX Q5G940_HELPX]] Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.[HAMAP-Rule:MF_00406] Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs (By similarity).[SAAS:SAAS00205551]
+
[https://www.uniprot.org/uniprot/Q5G940_HELPX Q5G940_HELPX] Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.[HAMAP-Rule:MF_00406] Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs (By similarity).[SAAS:SAAS00205551]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 37: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43504]]
+
[[Category: Helicobacter pylori]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Jiang, H]]
+
[[Category: Jiang H]]
-
[[Category: Kong, Y]]
+
[[Category: Kong Y]]
-
[[Category: Shen, X]]
+
[[Category: Shen X]]
-
[[Category: Wu, D]]
+
[[Category: Wu D]]
-
[[Category: Zhang, L]]
+
[[Category: Zhang L]]
-
[[Category: Fabz complex]]
+
-
[[Category: Lyase]]
+
-
[[Category: Sakuranetin]]
+

Current revision

Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with sakuranetin

PDB ID 3d04

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3d04"
Personal tools