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| | <StructureSection load='5mfu' size='340' side='right'caption='[[5mfu]], [[Resolution|resolution]] 2.15Å' scene=''> | | <StructureSection load='5mfu' size='340' side='right'caption='[[5mfu]], [[Resolution|resolution]] 2.15Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5mfu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MFU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MFU FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5mfu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MFU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MFU FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4y9o|4y9o]], [[4y9m|4y9m]], [[4y9n|4y9n]], [[4y9p|4y9p]], [[4y9q|4y9q]], [[4y8e|4y8e]], [[5mf5|5mf5]], [[5m1t|5m1t]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AO964_02925 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mfu OCA], [https://pdbe.org/5mfu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mfu RCSB], [https://www.ebi.ac.uk/pdbsum/5mfu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mfu ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mfu OCA], [http://pdbe.org/5mfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mfu RCSB], [http://www.ebi.ac.uk/pdbsum/5mfu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mfu ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9HXH7_PSEAE Q9HXH7_PSEAE] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | | | |
| | ==See Also== | | ==See Also== |
| - | *[[Phosphodiesterase|Phosphodiesterase]] | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Bellini, D]] | + | [[Category: Pseudomonas aeruginosa]] |
| - | [[Category: Horrell, S]] | + | [[Category: Bellini D]] |
| - | [[Category: Strange, R]] | + | [[Category: Horrell S]] |
| - | [[Category: Wagner, A]] | + | [[Category: Strange R]] |
| - | [[Category: Walsh, M]] | + | [[Category: Wagner A]] |
| - | [[Category: Biofilm formation]]
| + | [[Category: Walsh M]] |
| - | [[Category: Eal]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: P aeruginosa]]
| + | |
| - | [[Category: Pa3825]]
| + | |
| - | [[Category: Phosphodiesterase]]
| + | |
| Structural highlights
Function
Q9HXH7_PSEAE
Publication Abstract from PubMed
The bacterial second messenger cyclic di-3',5'-guanosine monophosphate (c-di-GMP) is a key regulator of bacterial motility and virulence. As high levels of c-di-GMP are associated with the biofilm lifestyle, c-di-GMP hydrolysing phosphodiesterases (PDEs) have been identified as key targets to aid development of novel strategies to treat chronic infection by exploiting biofilm dispersal. We have studied the EAL signature motif-containing phosphodiesterase domains from the Pseudomonas aeruginosa proteins PA3825 (PA3825EAL) and PA1727 (MucREAL). Different dimerisation interfaces allow us to identify interface independent principles of enzyme regulation. Unlike previously characterised two-metal binding EAL-phosphodiesterases, PA3825EAL in complex with pGpG provides a model for a third metal site. The third metal is positioned to stabilise the negative charge of the 5'-phosphate, and thus three metals could be required for catalysis in analogy to other nucleases. This newly uncovered variation in metal coordination may provide a further level of bacterial PDE regulation.
Dimerisation induced formation of the active site and the identification of three metal sites in EAL-phosphodiesterases.,Bellini D, Horrell S, Hutchin A, Phippen CW, Strange RW, Cai Y, Wagner A, Webb JS, Tews I, Walsh MA Sci Rep. 2017 Feb 10;7:42166. doi: 10.1038/srep42166. PMID:28186120[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Bellini D, Horrell S, Hutchin A, Phippen CW, Strange RW, Cai Y, Wagner A, Webb JS, Tews I, Walsh MA. Dimerisation induced formation of the active site and the identification of three metal sites in EAL-phosphodiesterases. Sci Rep. 2017 Feb 10;7:42166. doi: 10.1038/srep42166. PMID:28186120 doi:http://dx.doi.org/10.1038/srep42166
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