This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Ribosome 3D structures
From Proteopedia
(Difference between revisions)
| Line 8: | Line 8: | ||
**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]], [[5wnq]], [[5wnr]], [[5wns]], [[5wnt]], [[5wnu]], [[5wnv]] - Tt30S ribosomal subunit+THX+16S rRNA – Thermus thermophiles<br /> | **[[2zm6]], [[1n36]], [[1j5e]], [[3oto]], [[5wnq]], [[5wnr]], [[5wns]], [[5wnt]], [[5wnu]], [[5wnv]] - Tt30S ribosomal subunit+THX+16S rRNA – Thermus thermophiles<br /> | ||
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[6cao]], [[6caq]], [[6cas]] - Tt30S ribosomal subunit+16S rRNA+RNA fragment<br /> | **[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[6cao]], [[6caq]], [[6cas]] - Tt30S ribosomal subunit+16S rRNA+RNA fragment<br /> | ||
| - | **[[ | + | **[[4v6c]], [[1i94]], [[1fka]], [[4dr1]] - Tt30S ribosomal subunit+16S rRNA<br /> |
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S rRNA (mutant)<br /> | **[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S rRNA (mutant)<br /> | ||
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S rRNA + mRNA<br /> | **[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S rRNA + mRNA<br /> | ||
| Line 25: | Line 25: | ||
**[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br /> | **[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br /> | ||
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br /> | **[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br /> | ||
| - | **[[ | + | **[[4v8j]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br /> |
**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA<br /> | **[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA<br /> | ||
| Line 59: | Line 59: | ||
**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] - Tt30S ribosomal subunit+16S rRNA+antibiotic<br /> | **[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] - Tt30S ribosomal subunit+16S rRNA+antibiotic<br /> | ||
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br /> | **[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br /> | ||
| - | **[[ | + | **[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br /> |
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br /> | **[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br /> | ||
**[[6ypu]], [[6ytf]], [[7m4u]] – Ab30S + antibiotic - Cryo EM<br /> | **[[6ypu]], [[6ytf]], [[7m4u]] – Ab30S + antibiotic - Cryo EM<br /> | ||
| Line 66: | Line 66: | ||
*30S subunit + ribosome recycling factor | *30S subunit + ribosome recycling factor | ||
| - | **[[ | + | **[[4v9d]] - Ec30S ribosomal subunit+16S rRNA+ribosome recycling factor + mRNA + tRNA <br /> |
*30S subunit + elongation factor | *30S subunit + elongation factor | ||
| - | **[[ | + | **[[4v90]] - Tt30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor G<br /> |
**[[6enu]] - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM<br /> | **[[6enu]] - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM<br /> | ||
| Line 163: | Line 163: | ||
**[[2ftc]] – b50S subunit – bovine - Cryo_EM<br /> | **[[2ftc]] – b50S subunit – bovine - Cryo_EM<br /> | ||
**[[5mmi]], [[5x8t]] – s50S ribosomal subunit - Cryo-EM<br /> | **[[5mmi]], [[5x8t]] – s50S ribosomal subunit - Cryo-EM<br /> | ||
| - | **[[ | + | **[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] - Tt50S subunit <br /> |
| - | **[[ | + | **[[4v6c]] - Ec50S subunit<br /> |
**[[6gbz]], [[6gc0]], [[6gc4]], [[6gc6]], [[6gc7]], [[6gc8]], [[6ofx]], [[6wnt]], [[7bv8]], [[7lv0]], [[7lvk]], [[8c91]] - Ec50S subunit - Cryo_EM<br /> | **[[6gbz]], [[6gc0]], [[6gc4]], [[6gc6]], [[6gc7]], [[6gc8]], [[6ofx]], [[6wnt]], [[7bv8]], [[7lv0]], [[7lvk]], [[8c91]] - Ec50S subunit - Cryo_EM<br /> | ||
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit – Deinococcus radiodurans<br /> | **[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit – Deinococcus radiodurans<br /> | ||
| Line 258: | Line 258: | ||
*60S subunit + various proteins | *60S subunit + various proteins | ||
| - | **[[ | + | **[[4v6x]] – h60S subunit + P0 + P1 + P2 - Cryo EM<br /> |
**[[7ow7]] – h60S subunit + eIF6 - Cryo EM<br /> | **[[7ow7]] – h60S subunit + eIF6 - Cryo EM<br /> | ||
**[[8a3d]] – h60S subunit + eIF6 + antibiotics - Cryo EM<br /> | **[[8a3d]] – h60S subunit + eIF6 + antibiotics - Cryo EM<br /> | ||
**[[7f5s]] – h60S subunit + METTL18 - Cryo EM<br /> | **[[7f5s]] – h60S subunit + METTL18 - Cryo EM<br /> | ||
**[[6swa]] – m60S subunit + Ebp1 - Cryo EM<br /> | **[[6swa]] – m60S subunit + Ebp1 - Cryo EM<br /> | ||
| - | **[[ | + | **[[4v6i]] – y60S subunit + P0 + P1 + P2 - Cryo EM<br /> |
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> | **[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> | ||
| - | **[[ | + | **[[4v7r]] – y60S subunit + 5S rRNA + 5.8S rRNA + 25S rRNA + P0<br /> |
**[[6em5]], [[6em4]], [[6em3]], [[6elz]], [[6em1]] – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br /> | **[[6em5]], [[6em4]], [[6em3]], [[6elz]], [[6em1]] – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br /> | ||
**[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br /> | **[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br /> | ||
| Line 276: | Line 276: | ||
**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br /> | **[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br /> | ||
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br /> | **[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br /> | ||
| - | **[[ | + | **[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br /> |
**[[4v8p]] - Tet60S subunit+ 26S rRNA+ translation initiation factor 6 <br /> | **[[4v8p]] - Tet60S subunit+ 26S rRNA+ translation initiation factor 6 <br /> | ||
| Line 524: | Line 524: | ||
*80S ribosome | *80S ribosome | ||
| - | **[[4ug0]], [[5t2c]], [[6ip5 | + | **[[4ug0]], [[5t2c]], [[6ip5]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]], [[7xnx]], [[7xny]], [[7zfw]], [[8g5y]], [[8g5z]], [[[8g60]], [8g6j]] – hRibosome - Cryo-EM<br /> |
**[[4v5z]] - dRibosome – dog - Cryo-EM <br /> | **[[4v5z]] - dRibosome – dog - Cryo-EM <br /> | ||
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br /> | **[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br /> | ||
Current revision
Updated on 02-November-2023 For a general description of the protein see Ribosome
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Wayne Decatur, Joel L. Sussman, Jaime Prilusky, Alexander Berchansky
