8j3t

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m (Protected "8j3t" [edit=sysop:move=sysop])
Current revision (12:01, 8 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8j3t is ON HOLD until Paper Publication
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==Complex structure of human cytomegalovirus protease and a non-covalent small-molecule ligand==
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<StructureSection load='8j3t' size='340' side='right'caption='[[8j3t]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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Authors:
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8j3t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_betaherpesvirus_5 Human betaherpesvirus 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8J3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8J3T FirstGlance]. <br>
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Description:
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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[[Category: Unreleased Structures]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=T1F:(4R)-1-[1-[(S)-[1-cyclopentyl-3-(2-methylphenyl)pyrazol-4-yl]-(4-methylphenyl)methyl]-2-oxidanylidene-pyridin-3-yl]-3-methyl-2-oxidanylidene-N-(3-oxidanylidene-2-azabicyclo[2.2.2]octan-4-yl)imidazolidine-4-carboxamide'>T1F</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8j3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8j3t OCA], [https://pdbe.org/8j3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8j3t RCSB], [https://www.ebi.ac.uk/pdbsum/8j3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8j3t ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A0G2TMR2_HCMV A0A0G2TMR2_HCMV] Assemblin: Protease that plays an essential role in virion assembly within the nucleus. Catalyzes the cleavage of the assembly protein after formation of the spherical procapsid. By that cleavage, the capsid matures and gains its icosahedral shape. The cleavage sites seem to include -Ala-Ser-, -Ala-Ala-, as well as Ala-Thr bonds. Assemblin and cleavages products are evicted from the capsid before or during DNA packaging.[HAMAP-Rule:MF_04008] Assembly protein: Plays a major role in capsid assembly. Acts as a scaffold protein by binding major capsid protein. Multimerizes in the nucleus such as major capsid protein forms the icosahedral T=16 capsid. Cleaved by assemblin after capsid completion. The cleavages products are evicted from the capsid before or during DNA packaging.[HAMAP-Rule:MF_04008] Capsid scaffolding protein: Acts as a scaffold protein by binding major capsid protein in the cytoplasm, inducing the nuclear localization of both proteins. Multimerizes in the nucleus such as major capsid protein forms the icosahedral T=16 capsid. Autocatalytic cleavage releases the assembly protein, and subsequently abolishes interaction with major capsid protein. Cleavages products are evicted from the capsid before or during DNA packaging.[HAMAP-Rule:MF_04008]
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__TOC__
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</StructureSection>
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[[Category: Human betaherpesvirus 5]]
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[[Category: Large Structures]]
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[[Category: Ichihashi Y]]
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[[Category: Kato T]]
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[[Category: Kozono I]]
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[[Category: Nakahashi A]]
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[[Category: Nikaido E]]
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[[Category: Nishikawa J]]
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[[Category: Onishi M]]
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[[Category: Sako Y]]
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[[Category: Tachibana Y]]
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[[Category: Ueda T]]
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[[Category: Yamatsu Y]]
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[[Category: Yoshida S]]

Current revision

Complex structure of human cytomegalovirus protease and a non-covalent small-molecule ligand

PDB ID 8j3t

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