3vmk

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Current revision (12:27, 8 November 2023) (edit) (undo)
 
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<StructureSection load='3vmk' size='340' side='right'caption='[[3vmk]], [[Resolution|resolution]] 1.48&Aring;' scene=''>
<StructureSection load='3vmk' size='340' side='right'caption='[[3vmk]], [[Resolution|resolution]] 1.48&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3vmk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43992 Atcc 43992]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMK FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3vmk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_benthica Shewanella benthica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMK FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IPM:3-ISOPROPYLMALIC+ACID'>IPM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.48&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vmj|3vmj]], [[3vml|3vml]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IPM:3-ISOPROPYLMALIC+ACID'>IPM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">leuB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=43661 ATCC 43992])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/3-isopropylmalate_dehydrogenase 3-isopropylmalate dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.85 1.1.1.85] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmk OCA], [https://pdbe.org/3vmk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmk RCSB], [https://www.ebi.ac.uk/pdbsum/3vmk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmk ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmk OCA], [https://pdbe.org/3vmk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmk RCSB], [https://www.ebi.ac.uk/pdbsum/3vmk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/D2YZL2_9GAMM D2YZL2_9GAMM]] Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (By similarity).[RuleBase:RU004445][HAMAP-Rule:MF_01033][SAAS:SAAS001804_004_020645]
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[https://www.uniprot.org/uniprot/D2YZL2_9GAMM D2YZL2_9GAMM] Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (By similarity).[RuleBase:RU004445][HAMAP-Rule:MF_01033][SAAS:SAAS001804_004_020645]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: 3-isopropylmalate dehydrogenase]]
 
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[[Category: Atcc 43992]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Nagae, T]]
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[[Category: Shewanella benthica]]
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[[Category: Watanabe, N]]
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[[Category: Nagae T]]
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[[Category: Decarboxylating dehydrogenase]]
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[[Category: Watanabe N]]
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[[Category: Oxidoreductase]]
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Current revision

3-isopropylmalate dehydrogenase from Shewanella benthica DB21 MT-2

PDB ID 3vmk

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