3vpd

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Current revision (12:31, 8 November 2023) (edit) (undo)
 
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<StructureSection load='3vpd' size='340' side='right'caption='[[3vpd]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
<StructureSection load='3vpd' size='340' side='right'caption='[[3vpd]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3vpd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VPD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3vpd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VPD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=BUA:BUTANOIC+ACID'>BUA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vpb|3vpb]], [[3vpc|3vpc]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=BUA:BUTANOIC+ACID'>BUA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LysX, rimK ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vpd OCA], [https://pdbe.org/3vpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vpd RCSB], [https://www.ebi.ac.uk/pdbsum/3vpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vpd ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vpd OCA], [https://pdbe.org/3vpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vpd RCSB], [https://www.ebi.ac.uk/pdbsum/3vpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vpd ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LYSX_THET8 LYSX_THET8] Catalyzes the ATP-dependent formation of a covalent bond between the amino group of alpha-aminoadipate (AAA) and the gamma-carboxyl group of the C-terminal glutamate residue in LysW.<ref>PMID:19620981</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Kuzuyama, T]]
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[[Category: Thermus thermophilus]]
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[[Category: Nishiyama, M]]
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[[Category: Kuzuyama T]]
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[[Category: Ouchi, T]]
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[[Category: Nishiyama M]]
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[[Category: Tomita, T]]
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[[Category: Ouchi T]]
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[[Category: Atp-dependenet amine/thiol ligase]]
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[[Category: Tomita T]]
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[[Category: Atp-dependenet amine/thiol ligase family]]
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[[Category: Ligase]]
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Current revision

LysX from Thermus thermophilus complexed with AMP-PNP

PDB ID 3vpd

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