This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3vuf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:38, 8 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3vuf' size='340' side='right'caption='[[3vuf]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='3vuf' size='340' side='right'caption='[[3vuf]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3vuf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VUF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VUF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3vuf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VUF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VUF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vue|3vue]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">WAXY, WX, WX-B, Os06g0133000, LOC_Os06g04200, 134P10.7, P0679C08.19 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/NDP-glucose--starch_glucosyltransferase NDP-glucose--starch glucosyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.242 2.4.1.242] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vuf OCA], [https://pdbe.org/3vuf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vuf RCSB], [https://www.ebi.ac.uk/pdbsum/3vuf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vuf ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vuf OCA], [https://pdbe.org/3vuf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vuf RCSB], [https://www.ebi.ac.uk/pdbsum/3vuf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vuf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/SSG1_ORYSJ SSG1_ORYSJ]] Required for the synthesis of amylose in endosperm.[HAMAP-Rule:MF_00484]
+
[https://www.uniprot.org/uniprot/SSG1_ORYSJ SSG1_ORYSJ] Required for the synthesis of amylose in endosperm.[HAMAP-Rule:MF_00484]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Japanese rice]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: NDP-glucose--starch glucosyltransferase]]
+
[[Category: Oryza sativa Japonica Group]]
-
[[Category: Fujimoto, Z]]
+
[[Category: Fujimoto Z]]
-
[[Category: Momma, M]]
+
[[Category: Momma M]]
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Rossmann fold]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of Rice Granule bound Starch Synthase I Catalytic Domain in Complex with ADP

PDB ID 3vuf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools