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3wbf

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Current revision (13:02, 8 November 2023) (edit) (undo)
 
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<StructureSection load='3wbf' size='340' side='right'caption='[[3wbf]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
<StructureSection load='3wbf' size='340' side='right'caption='[[3wbf]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3wbf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Symth Symth]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WBF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WBF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3wbf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Symbiobacterium_thermophilum_IAM_14863 Symbiobacterium thermophilum IAM 14863]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WBF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WBF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=API:2,6-DIAMINOPIMELIC+ACID'>API</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.12&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3wb9|3wb9]], [[3wbb|3wbb]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=API:2,6-DIAMINOPIMELIC+ACID'>API</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">meso-dapdh, STH1425 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292459 SYMTH])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Diaminopimelate_dehydrogenase Diaminopimelate dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.16 1.4.1.16] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wbf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wbf OCA], [https://pdbe.org/3wbf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wbf RCSB], [https://www.ebi.ac.uk/pdbsum/3wbf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wbf ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wbf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wbf OCA], [https://pdbe.org/3wbf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wbf RCSB], [https://www.ebi.ac.uk/pdbsum/3wbf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wbf ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q67PI3_SYMTH Q67PI3_SYMTH]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Diaminopimelate dehydrogenase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Symth]]
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[[Category: Symbiobacterium thermophilum IAM 14863]]
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[[Category: Guo, R T]]
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[[Category: Guo RT]]
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[[Category: Huang, C H]]
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[[Category: Huang CH]]
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[[Category: Li, Z]]
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[[Category: Li Z]]
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[[Category: Liu, W D]]
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[[Category: Liu WD]]
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[[Category: Wu, Q Q]]
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[[Category: Wu QQ]]
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[[Category: Zhu, D M]]
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[[Category: Zhu DM]]
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[[Category: D-amino acid dehydrogenase]]
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[[Category: Domain motion]]
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[[Category: Oxidoreductase]]
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[[Category: Thermo-stable]]
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Current revision

Crystal Structure of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum co-crystallized with NADP+ and DAP

PDB ID 3wbf

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