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| <StructureSection load='3wdp' size='340' side='right'caption='[[3wdp]], [[Resolution|resolution]] 1.70Å' scene=''> | | <StructureSection load='3wdp' size='340' side='right'caption='[[3wdp]], [[Resolution|resolution]] 1.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3wdp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WDP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3wdp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WDP FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3apg|3apg]]</div></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">celB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr> | + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdp OCA], [https://pdbe.org/3wdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wdp RCSB], [https://www.ebi.ac.uk/pdbsum/3wdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wdp ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdp OCA], [https://pdbe.org/3wdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wdp RCSB], [https://www.ebi.ac.uk/pdbsum/3wdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wdp ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q51723_9EURY Q51723_9EURY] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Atcc 43587]] | |
- | [[Category: Beta-glucosidase]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Ishikawa, K]] | + | [[Category: Pyrococcus furiosus]] |
- | [[Category: Kataoka, M]] | + | [[Category: Ishikawa K]] |
- | [[Category: Nakabayashi, M]] | + | [[Category: Kataoka M]] |
- | [[Category: Hydrolase]] | + | [[Category: Nakabayashi M]] |
- | [[Category: Hydrolysis]]
| + | |
- | [[Category: Sugar binding]]
| + | |
- | [[Category: Tim barrel]]
| + | |
| Structural highlights
Function
Q51723_9EURY
Publication Abstract from PubMed
beta-Glucosidase from Pyrococcus furiosus (BGLPf) is a hyperthermophilic tetrameric enzyme which can degrade cellooligosaccharides to glucose under hyperthermophilic conditions and thus holds promise for the saccharification of lignocellulosic biomass at high temperature. Prior to the production of large amounts of this enzyme, detailed information regarding the oligomeric structure of the enzyme is required. Several crystals of BGLPf have been prepared over the past ten years, but its crystal structure had not been solved until recently. In 2011, the first crystal structure of BGLPf was solved and a model was constructed at somewhat low resolution (2.35 A). In order to obtain more detailed structural data on BGLPf, the relationship between its tetrameric structure and the quality of the crystal was re-examined. A dimeric form of BGLPf was constructed and its crystal structure was solved at a resolution of 1.70 A using protein-engineering methods. Furthermore, using the high-resolution crystal structural data for the dimeric form, a monomeric form of BGLPf was constructed which retained the intrinsic activity of the tetrameric form. The thermostability of BGLPf is affected by its oligomeric structure. Here, the biophysical and biochemical properties of engineered dimeric and monomeric BGLPfs are reported, which are promising prototype models to apply to the saccharification reaction. Furthermore, details regarding the oligomeric structures of BGLPf and the reasons why the mutations yielded improved crystal structures are discussed.
Structural analysis of beta-glucosidase mutants derived from a hyperthermophilic tetrameric structure.,Nakabayashi M, Kataoka M, Mishima Y, Maeno Y, Ishikawa K Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):877-88. doi:, 10.1107/S1399004713032276. Epub 2014 Feb 27. PMID:24598756[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Nakabayashi M, Kataoka M, Mishima Y, Maeno Y, Ishikawa K. Structural analysis of beta-glucosidase mutants derived from a hyperthermophilic tetrameric structure. Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):877-88. doi:, 10.1107/S1399004713032276. Epub 2014 Feb 27. PMID:24598756 doi:http://dx.doi.org/10.1107/S1399004713032276
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