3wpp

From Proteopedia

(Difference between revisions)

Current revision

Acinetobacter sp. Tol 5 AtaA YDD-DALL3 domains in C-terminal stalk fused to GCN4 adaptors (CstalkC1iii)

Structural highlights

3wpp is a 1 chain structure with sequence from Acinetobacter sp. Tol 5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.952Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

ATAA_ACIS5 Responsible for autoagglutination, and for adhesion to abiotic and biotic surfaces such as polystyrene (PS), type I collagen, polypropylene (PP), polyvinylchloride (PVC), glass and stainless steel (SS). Adhesion is much stronger than that mediated by Yersinia YadA in a comparative assay. Confers autoagglutination and binding to PS, type I collagen, PP, PVC, glass and SS upon expression in Acinetobacter baylyi strain ADP1 (PubMed:23155410). Involved in rapid, irreversible adherence to polyurethane (PubMed:17090933). Forms an unusual biofilm (PubMed:31972092). An extended, surface exposed fiber binds to quartz crystals, PS and glass. It can be removed by washing in distilled water (PubMed:27305955, PubMed:28720107).^[1] ^[2] ^[3] ^[4] ^[5]

Publication Abstract from PubMed

Trimeric autotransporter adhesins (TAAs) on the cell surface of Gram-negative pathogens mediate bacterial adhesion to host cells and extracellular matrix proteins. However, AtaA, a TAA in the nonpathogenic Acinetobacter sp. strain Tol 5, shows nonspecific high adhesiveness to abiotic material surfaces as well as to biotic surfaces. It consists of a passenger domain secreted by the C-terminal transmembrane anchor domain (TM), and the passenger domain contains an N-terminal head, N-terminal stalk, C-terminal head (Chead), and C-terminal stalk (Cstalk). The Chead-Cstalk-TM fragment, which is conserved in many Acinetobacter TAAs, has by itself the head-stalk-anchor architecture of a complete TAA. Here, we show the crystal structure of the Chead-Cstalk fragment, AtaA_C-terminal passenger domain (CPSD), providing the first view of several conserved TAA domains. The YadA-like head (Ylhead) of the fragment is capped by a unique structure (headCap), composed of three beta-hairpins and a connector motif; it also contains a head insert motif (HIM1) before its last inner beta-strand. The headCap, Ylhead, and HIM1 integrally form a stable Chead structure. Some of the major domains of the CPSD fragment are inherently flexible and provide bending sites for the fiber between segments whose toughness is ensured by topological chain exchange and hydrophobic core formation inside the trimer. Thus, although adherence assays using in-frame deletion mutants revealed that the characteristic adhesive sites of AtaA reside in its N-terminal part, the flexibility and toughness of the CPSD part provide the resilience that enables the adhesive properties of the full-length fiber across a wide range of conditions.

Structural Basis for Toughness and Flexibility in the C-terminal Passenger Domain of an Acinetobacter Trimeric Autotransporter Adhesin.,Koiwai K, Hartmann MD, Linke D, Lupas AN, Hori K J Biol Chem. 2016 Feb 19;291(8):3705-24. doi: 10.1074/jbc.M115.701698. Epub 2015 , Dec 23. PMID:26698633^[6]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Ishii S, Unno H, Miyata S, Hori K. Effect of cell appendages on the adhesion properties of a highly adhesive bacterium, Acinetobacter sp. Tol 5. Biosci Biotechnol Biochem. 2006 Nov;70(11):2635-40. PMID:17090933 doi:10.1271/bbb.60236
↑ Ishikawa M, Nakatani H, Hori K. AtaA, a new member of the trimeric autotransporter adhesins from Acinetobacter sp. Tol 5 mediating high adhesiveness to various abiotic surfaces. PLoS One. 2012;7(11):e48830. PMID:23155410 doi:10.1371/journal.pone.0048830
↑ Yoshimoto S, Nakatani H, Iwasaki K, Hori K. An Acinetobacter trimeric autotransporter adhesin reaped from cells exhibits its nonspecific stickiness via a highly stable 3D structure. Sci Rep. 2016 Jun 16;6:28020. PMID:27305955 doi:10.1038/srep28020
↑ Yoshimoto S, Ohara Y, Nakatani H, Hori K. Reversible bacterial immobilization based on the salt-dependent adhesion of the bacterionanofiber protein AtaA. Microb Cell Fact. 2017 Jul 18;16(1):123. PMID:28720107 doi:10.1186/s12934-017-0740-7
↑ Furuichi Y, Yoshimoto S, Inaba T, Nomura N, Hori K. Process Description of an Unconventional Biofilm Formation by Bacterial Cells Autoagglutinating through Sticky, Long, and Peritrichate Nanofibers. Environ Sci Technol. 2020 Feb 18;54(4):2520-2529. PMID:31972092 doi:10.1021/acs.est.9b06577
↑ Koiwai K, Hartmann MD, Linke D, Lupas AN, Hori K. Structural Basis for Toughness and Flexibility in the C-terminal Passenger Domain of an Acinetobacter Trimeric Autotransporter Adhesin. J Biol Chem. 2016 Feb 19;291(8):3705-24. doi: 10.1074/jbc.M115.701698. Epub 2015 , Dec 23. PMID:26698633 doi:http://dx.doi.org/10.1074/jbc.M115.701698

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3wpp"

@@ Line 3: / Line 3: @@
 <StructureSection load='3wpp' size='340' side='right'caption='[[3wpp]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3wpp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_sp._tol_5 Acinetobacter sp. tol 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WPP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WPP FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3wpp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_sp._Tol_5 Acinetobacter sp. Tol 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WPP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WPP FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.952&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3wp8|3wp8]], [[3wpa|3wpa]], [[3wpo|3wpo]], [[3wpr|3wpr]]</div></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ataA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=710648 Acinetobacter sp. Tol 5])</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wpp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wpp OCA], [https://pdbe.org/3wpp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wpp RCSB], [https://www.ebi.ac.uk/pdbsum/3wpp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wpp ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/ATAA_ACIS5 ATAA_ACIS5] Responsible for autoagglutination, and for adhesion to abiotic and biotic surfaces such as polystyrene (PS), type I collagen, polypropylene (PP), polyvinylchloride (PVC), glass and stainless steel (SS). Adhesion is much stronger than that mediated by Yersinia YadA in a comparative assay. Confers autoagglutination and binding to PS, type I collagen, PP, PVC, glass and SS upon expression in Acinetobacter baylyi strain ADP1 (PubMed:23155410). Involved in rapid, irreversible adherence to polyurethane (PubMed:17090933). Forms an unusual biofilm (PubMed:31972092). An extended, surface exposed fiber binds to quartz crystals, PS and glass. It can be removed by washing in distilled water (PubMed:27305955, PubMed:28720107).<ref>PMID:17090933</ref> <ref>PMID:23155410</ref> <ref>PMID:27305955</ref> <ref>PMID:28720107</ref> <ref>PMID:31972092</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 25: / Line 26: @@
 __TOC__
 </StructureSection>
-[[Category: Acinetobacter sp. tol 5]]
+[[Category: Acinetobacter sp. Tol 5]]
 [[Category: Large Structures]]
-[[Category: Hartmann, M D]]
+[[Category: Hartmann MD]]
-[[Category: Hori, K]]
+[[Category: Hori K]]
-[[Category: Izzah, N Nur]]
+[[Category: Koiwai K]]
-[[Category: Koiwai, K]]
+[[Category: Linke D]]
-[[Category: Linke, D]]
+[[Category: Lupas AN]]
-[[Category: Lupas, A N]]
+[[Category: Nur 'Izzah N]]
-[[Category: Suzuki, A]]
+[[Category: Suzuki A]]
-[[Category: Yoshimoto, S]]
+[[Category: Yoshimoto S]]
-[[Category: Adhesin]]
-[[Category: Cell adhesion]]
-[[Category: Dall3]]
-[[Category: Nanofiber]]
-[[Category: Taa]]
-[[Category: Trimeric autotransporter adhesin]]
-[[Category: Ydd]]

3wpp

From Proteopedia

Current revision

Acinetobacter sp. Tol 5 AtaA YDD-DALL3 domains in C-terminal stalk fused to GCN4 adaptors (CstalkC1iii)

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox