3wu6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:29, 8 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3wu6' size='340' side='right'caption='[[3wu6]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='3wu6' size='340' side='right'caption='[[3wu6]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wu6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecod1 Ecod1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WU6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WU6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wu6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_DH1 Escherichia coli DH1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WU6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WU6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3wu3|3wu3]], [[3wu4|3wu4]], [[3wu5|3wu5]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LON, ECDH1_3170, ECDH1ME8569_0424 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536056 ECOD1])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endopeptidase_La Endopeptidase La], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.53 3.4.21.53] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wu6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wu6 OCA], [https://pdbe.org/3wu6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wu6 RCSB], [https://www.ebi.ac.uk/pdbsum/3wu6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wu6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wu6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wu6 OCA], [https://pdbe.org/3wu6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wu6 RCSB], [https://www.ebi.ac.uk/pdbsum/3wu6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wu6 ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
 
-
[[https://www.uniprot.org/uniprot/C9QQ79_ECOD1 C9QQ79_ECOD1]] ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. Endogenous substrates include the regulatory proteins RcsA and SulA, the transcriptional activator SoxS, and UmuD. Its overproduction specifically inhibits translation trough at least two different pathways, one of them being the YoeB-YefM toxin-antitoxin system.[HAMAP-Rule:MF_01973]
 
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecod1]]
+
[[Category: Escherichia coli DH1]]
-
[[Category: Endopeptidase La]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Kukimoto-Niino, M]]
+
[[Category: Kukimoto-Niino M]]
-
[[Category: Muramatsu, T]]
+
[[Category: Muramatsu T]]
-
[[Category: Nishii, W]]
+
[[Category: Nishii W]]
-
[[Category: Shirouzu, M]]
+
[[Category: Shirouzu M]]
-
[[Category: Terada, T]]
+
[[Category: Terada T]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: Atp binding]]
+
-
[[Category: Catalytic dyad ser-ly]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Lon protease]]
+
-
[[Category: Oxidized form]]
+

Current revision

Oxidized E.coli Lon Proteolytic domain

PDB ID 3wu6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools