This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5hxr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:39, 8 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5hxr' size='340' side='right'caption='[[5hxr]], [[Resolution|resolution]] 2.46&Aring;' scene=''>
<StructureSection load='5hxr' size='340' side='right'caption='[[5hxr]], [[Resolution|resolution]] 2.46&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5hxr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HXR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5hxr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HXR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MYS:PENTADECANE'>MYS</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.463&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[5hya|5hya]], [[5hxs|5hxs]], [[5hxh|5hxh]], [[5hxe|5hxe]], [[5hxc|5hxc]], [[5hwy|5hwy]], [[5hwx|5hwx]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MYS:PENTADECANE'>MYS</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MJ0091 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hxr OCA], [https://pdbe.org/5hxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hxr RCSB], [https://www.ebi.ac.uk/pdbsum/5hxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hxr ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hxr OCA], [https://pdbe.org/5hxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hxr RCSB], [https://www.ebi.ac.uk/pdbsum/5hxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hxr ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Y091_METJA Y091_METJA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Metja]]
+
[[Category: Methanocaldococcus jannaschii DSM 2661]]
-
[[Category: Faraldo-Gomez, J D]]
+
[[Category: Faraldo-Gomez JD]]
-
[[Category: Jiang, Y X]]
+
[[Category: Jiang YX]]
-
[[Category: Liao, J]]
+
[[Category: Liao J]]
-
[[Category: Calcium signalling]]
+
-
[[Category: Induced conformational change]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Membrane transporter]]
+
-
[[Category: Na+/ca2+ exchange]]
+

Current revision

Structural mechanisms of extracellular ion exchange and induced binding-site occlusion in the sodium-calcium exchanger NCX_Mj soaked with 2.5 mM Na+ and 10mM Ca2+

PDB ID 5hxr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5hxr"
Personal tools