This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5mr3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:46, 8 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution==
==Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution==
-
<StructureSection load='5mr3' size='340' side='right' caption='[[5mr3]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='5mr3' size='340' side='right'caption='[[5mr3]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5mr3]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/California_red_abalone California red abalone]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MR3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MR3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5mr3]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Haliotis_rufescens Haliotis rufescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MR3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5mr2|5mr2]], [[5ii4|5ii4]], [[5ii5|5ii5]], [[5iic|5iic]], [[5iia|5iia]], [[5iib|5iib]], [[3d4c|3d4c]], [[3d4g|3d4g]], [[3ef7|3ef7]], [[3nk3|3nk3]], [[3nk4|3nk4]], [[5ii7|5ii7]], [[5ii8|5ii8]], [[5ii9|5ii9]], [[1lis|1lis]], [[2lis|2lis]], [[1lyn|1lyn]], [[2lyn|2lyn]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VERL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6454 California red abalone])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mr3 OCA], [https://pdbe.org/5mr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mr3 RCSB], [https://www.ebi.ac.uk/pdbsum/5mr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mr3 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mr3 OCA], [http://pdbe.org/5mr3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mr3 RCSB], [http://www.ebi.ac.uk/pdbsum/5mr3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mr3 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU]] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
+
[https://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 5mr3" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5mr3" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Lysin 3D structures|Lysin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: California red abalone]]
+
[[Category: Haliotis rufescens]]
-
[[Category: Al-Hosseini, H Sadat]]
+
[[Category: Large Structures]]
-
[[Category: Jovine, L]]
+
[[Category: De Sanctis D]]
-
[[Category: Nishimura, K]]
+
[[Category: Jovine L]]
-
[[Category: Raj, I]]
+
[[Category: Nishimura K]]
-
[[Category: Sanctis, D De]]
+
[[Category: Raj I]]
-
[[Category: Cell adhesion]]
+
[[Category: Sadat Al-Hosseini H]]
-
[[Category: Egg coat]]
+
-
[[Category: Egg-sperm interaction]]
+
-
[[Category: Fertilization]]
+
-
[[Category: Gamete recognition]]
+
-
[[Category: Sperm acrosome]]
+
-
[[Category: Sperm penetration]]
+
-
[[Category: Sperm receptor]]
+
-
[[Category: Vitelline envelope]]
+
-
[[Category: Zp domain]]
+
-
[[Category: Zp-n domain]]
+

Current revision

Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution

PDB ID 5mr3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5mr3"
Personal tools