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| | ==Crystal structure of the FimH lectin domain in complex with 1,5-Anhydromannitol== | | ==Crystal structure of the FimH lectin domain in complex with 1,5-Anhydromannitol== |
| - | <StructureSection load='5muc' size='340' side='right' caption='[[5muc]], [[Resolution|resolution]] 2.60Å' scene=''> | + | <StructureSection load='5muc' size='340' side='right'caption='[[5muc]], [[Resolution|resolution]] 2.60Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5muc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MUC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MUC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5muc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MUC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MUC FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AH2:1,5-Anhydromannitol'>AH2</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fimH, b4320, JW4283 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AH2:1-deoxy-alpha-D-mannopyranose'>AH2</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5muc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5muc OCA], [http://pdbe.org/5muc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5muc RCSB], [http://www.ebi.ac.uk/pdbsum/5muc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5muc ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5muc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5muc OCA], [https://pdbe.org/5muc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5muc RCSB], [https://www.ebi.ac.uk/pdbsum/5muc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5muc ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/FIMH_ECOLI FIMH_ECOLI]] Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Adhesin responsible for the binding to D-mannose. It is laterally positioned at intervals in the structure of the type 1 fimbriae. In order to integrate FimH in the fimbriae FimF and FimG are needed. | + | [https://www.uniprot.org/uniprot/FIMH_ECOLI FIMH_ECOLI] Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Adhesin responsible for the binding to D-mannose. It is laterally positioned at intervals in the structure of the type 1 fimbriae. In order to integrate FimH in the fimbriae FimF and FimG are needed. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | ==See Also== | | ==See Also== |
| - | *[[Adhesin|Adhesin]] | + | *[[Adhesin 3D structures|Adhesin 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Ecoli]] | + | [[Category: Escherichia coli K-12]] |
| - | [[Category: Ernst, B]] | + | [[Category: Large Structures]] |
| - | [[Category: Jakob, R P]] | + | [[Category: Ernst B]] |
| - | [[Category: Maier, T]] | + | [[Category: Jakob RP]] |
| - | [[Category: Rabbani, S]] | + | [[Category: Maier T]] |
| - | [[Category: Bladder infection]]
| + | [[Category: Rabbani S]] |
| - | [[Category: Carbohydrate]]
| + | |
| - | [[Category: Fimh]]
| + | |
| - | [[Category: Lectin]]
| + | |
| - | [[Category: Sugar binding protein]]
| + | |
| - | [[Category: Upec]]
| + | |
| - | [[Category: Uti]]
| + | |
| Structural highlights
Function
FIMH_ECOLI Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Adhesin responsible for the binding to D-mannose. It is laterally positioned at intervals in the structure of the type 1 fimbriae. In order to integrate FimH in the fimbriae FimF and FimG are needed.
Publication Abstract from PubMed
Affinity data, such as dissociation constants (KD) or inhibitory concentrations (IC50), are widely used in drug discovery. However, these parameters describe an equilibrium state, which is often not established in vivo due to pharmacokinetic effects and they are therefore not necessarily sufficient for evaluating drug efficacy. More accurate indicators for pharmacological activity are the kinetics of binding processes, as they shed light on the rate of formation of drug-target complexes and their half-life. Nonetheless, although highly desirable for medicinal chemistry programs, studies on structure-kinetic relationships (SKR) are still rare. With the recently introduced analytical tool kinITC this situation may change, since not only thermodynamic but also kinetic information of the binding process can be deduced from isothermal titration calorimetry (ITC) experiments. Using kinITC, ITC data of 29 mannosides binding to the bacterial adhesin FimH were re-analyzed to make their binding kinetics accessible. To validate these kinetic data, surface plasmon resonance (SPR) experiments were conducted. The kinetic analysis by kinITC revealed that the nanomolar affinities of the FimH antagonists arise from both (i) an optimized interaction between protein and ligand in the bound state (reduced off-rate constant koff), and (ii) a stabilization of the transition state or a destabilization of the unbound state (increased on-rate constant kon).
KinITC - One method supports both thermodynamic and kinetic SARs as exemplified on FimH antagonists.,Ernst B, Zihlmann P, Slbermann M, Sharpe T, Jiang X, Muhlethaler T, Jakob RP, Rabbani S, Sager CP, Frei P, Maier T Chemistry. 2018 Jun 25. doi: 10.1002/chem.201802599. PMID:29939458[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Ernst B, Zihlmann P, Slbermann M, Sharpe T, Jiang X, Muhlethaler T, Jakob RP, Rabbani S, Sager CP, Frei P, Maier T. KinITC - One method supports both thermodynamic and kinetic SARs as exemplified on FimH antagonists. Chemistry. 2018 Jun 25. doi: 10.1002/chem.201802599. PMID:29939458 doi:http://dx.doi.org/10.1002/chem.201802599
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