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| ==Crystal structure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A== | | ==Crystal structure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A== |
- | <StructureSection load='5n5p' size='340' side='right' caption='[[5n5p]], [[Resolution|resolution]] 1.98Å' scene=''> | + | <StructureSection load='5n5p' size='340' side='right'caption='[[5n5p]], [[Resolution|resolution]] 1.98Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5n5p]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruminococcus_flavefaciens_fd-1 Ruminococcus flavefaciens fd-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N5P FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5n5p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruminococcus_flavefaciens_FD-1 Ruminococcus flavefaciens FD-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5N5P FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CCN:ACETONITRILE'>CCN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.98Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=641112 Ruminococcus flavefaciens FD-1]), scaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=641112 Ruminococcus flavefaciens FD-1])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CCN:ACETONITRILE'>CCN</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5n5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n5p OCA], [http://pdbe.org/5n5p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n5p RCSB], [http://www.ebi.ac.uk/pdbsum/5n5p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n5p ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5n5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n5p OCA], [https://pdbe.org/5n5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5n5p RCSB], [https://www.ebi.ac.uk/pdbsum/5n5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5n5p ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0AEF3_RUMFL A0AEF3_RUMFL] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Ruminococcus flavefaciens fd-1]] | + | [[Category: Large Structures]] |
- | [[Category: Bule, P]] | + | [[Category: Ruminococcus flavefaciens FD-1]] |
- | [[Category: Carvalho, A L]] | + | [[Category: Bule P]] |
- | [[Category: Fontes, C M.G A]] | + | [[Category: Carvalho AL]] |
- | [[Category: Najmudin, S]] | + | [[Category: Fontes CMGA]] |
- | [[Category: Cell adhesion]]
| + | [[Category: Najmudin S]] |
- | [[Category: Cellulosome]]
| + | |
- | [[Category: Coh-doc]]
| + | |
- | [[Category: Cohesin]]
| + | |
- | [[Category: Dockerin]]
| + | |
- | [[Category: Protein binding]]
| + | |
- | [[Category: Protein-protein interaction]]
| + | |
- | [[Category: Type iii cohesin-dockerin]]
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| Structural highlights
Function
A0AEF3_RUMFL
Publication Abstract from PubMed
Cellulosomes are highly sophisticated molecular nanomachines that participate in the deconstruction of complex polysaccharides, notably cellulose and hemicellulose. Cellulosomal assembly is orchestrated by the interaction of enzyme-borne dockerin (Doc) modules to tandem cohesin (Coh) modules of a non-catalytic primary scaffoldin. In some cases, as exemplified by the cellulosome of the major cellulolytic ruminal bacterium Ruminococcus flavefaciens, primary scaffoldins bind to adaptor scaffoldins that further interact with the cell surface via anchoring scaffoldins, thereby increasing cellulosome complexity. Here we elucidate the structure of the unique Doc of R. flavefaciens FD-1 primary scaffoldin ScaA, bound to Coh 5 of the adaptor scaffoldin ScaB. The RfCohScaB5-DocScaA complex has an elliptical architecture similar to previously described complexes from a variety of ecological niches. ScaA Doc presents a single-binding mode, analogous to that described for the other two Coh-Doc specificities required for cellulosome assembly in R. flavefaciens. The exclusive reliance on a single-mode of Coh recognition contrasts with the majority of cellulosomes from other bacterial species described to date, where Docs contain two similar Coh-binding interfaces promoting a dual-binding mode. The discrete Coh-Doc interactions observed in ruminal cellulosomes suggest an adaptation to the exquisite properties of the rumen environment.
Higher order scaffoldin assembly in Ruminococcus flavefaciens cellulosome is coordinated by a discrete cohesin-dockerin interaction.,Bule P, Pires VMR, Alves VD, Carvalho AL, Prates JAM, Ferreira LMA, Smith SP, Gilbert HJ, Noach I, Bayer EA, Najmudin S, Fontes CMGA Sci Rep. 2018 May 3;8(1):6987. doi: 10.1038/s41598-018-25171-8. PMID:29725056[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Bule P, Pires VMR, Alves VD, Carvalho AL, Prates JAM, Ferreira LMA, Smith SP, Gilbert HJ, Noach I, Bayer EA, Najmudin S, Fontes CMGA. Higher order scaffoldin assembly in Ruminococcus flavefaciens cellulosome is coordinated by a discrete cohesin-dockerin interaction. Sci Rep. 2018 May 3;8(1):6987. doi: 10.1038/s41598-018-25171-8. PMID:29725056 doi:http://dx.doi.org/10.1038/s41598-018-25171-8
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