This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3svc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 15 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3svc' size='340' side='right'caption='[[3svc]], [[Resolution|resolution]] 1.31&Aring;' scene=''>
<StructureSection load='3svc' size='340' side='right'caption='[[3svc]], [[Resolution|resolution]] 1.31&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3svc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SVC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3svc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SVC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.31&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3sry|3sry]], [[3ss0|3ss0]], [[3ssh|3ssh]], [[3ssk|3ssk]], [[3ssl|3ssl]], [[3ssp|3ssp]], [[3sst|3sst]], [[3ssv|3ssv]], [[3ssy|3ssy]], [[3sve|3sve]], [[3st0|3st0]], [[3sv5|3sv5]], [[3svb|3svb]], [[3svd|3svd]]</div></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3svc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3svc OCA], [https://pdbe.org/3svc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3svc RCSB], [https://www.ebi.ac.uk/pdbsum/3svc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3svc ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3svc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3svc OCA], [https://pdbe.org/3svc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3svc RCSB], [https://www.ebi.ac.uk/pdbsum/3svc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3svc ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+
[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
==See Also==
==See Also==
Line 17: Line 15:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aeqvi]]
+
[[Category: Aequorea victoria]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Beese, L S]]
+
[[Category: Beese LS]]
-
[[Category: Grimley, J S]]
+
[[Category: Grimley JS]]
-
[[Category: Hellinga, H W]]
+
[[Category: Hellinga HW]]
-
[[Category: Wang, W]]
+
[[Category: Wang W]]
-
[[Category: Beta barrel]]
+
-
[[Category: Halide binding protein]]
+
-
[[Category: Imaging reagent]]
+
-
[[Category: Luminescent protein]]
+
-
[[Category: Yellow fluorescent protein]]
+

Current revision

Engineered medium-affinity halide-binding protein derived from YFP: chloride complex

PDB ID 3svc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools