5ncx

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==Crystal structure of Thermoanaerobacterium xylolyticum GH116 beta-glucosidase with an covalent inhibitor==
==Crystal structure of Thermoanaerobacterium xylolyticum GH116 beta-glucosidase with an covalent inhibitor==
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<StructureSection load='5ncx' size='340' side='right' caption='[[5ncx]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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<StructureSection load='5ncx' size='340' side='right'caption='[[5ncx]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5ncx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thexl Thexl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NCX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NCX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5ncx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoanaerobacterium_xylanolyticum_LX-11 Thermoanaerobacterium xylanolyticum LX-11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NCX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NCX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K35:~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]pentanamide'>K35</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Thexy_2211 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=858215 THEXL])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K35:~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]pentanamide'>K35</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucosylceramidase Glucosylceramidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.45 3.2.1.45] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ncx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ncx OCA], [https://pdbe.org/5ncx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ncx RCSB], [https://www.ebi.ac.uk/pdbsum/5ncx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ncx ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ncx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ncx OCA], [http://pdbe.org/5ncx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ncx RCSB], [http://www.ebi.ac.uk/pdbsum/5ncx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ncx ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/F6BL85_THEXL F6BL85_THEXL]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Glucosylceramidase]]
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[[Category: Large Structures]]
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[[Category: Thexl]]
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[[Category: Thermoanaerobacterium xylanolyticum LX-11]]
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[[Category: Breen, I Z]]
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[[Category: Breen IZ]]
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[[Category: Davies, G J]]
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[[Category: Davies GJ]]
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[[Category: Beta-glucosidase]]
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[[Category: Gh116]]
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[[Category: Glucocerebrosidase]]
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[[Category: Hydrolase]]
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Revision as of 12:48, 15 November 2023

Crystal structure of Thermoanaerobacterium xylolyticum GH116 beta-glucosidase with an covalent inhibitor

PDB ID 5ncx

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