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| ==Chicken GRIFIN (crystallisation pH: 7.5)== | | ==Chicken GRIFIN (crystallisation pH: 7.5)== |
- | <StructureSection load='5nld' size='340' side='right' caption='[[5nld]], [[Resolution|resolution]] 0.96Å' scene=''> | + | <StructureSection load='5nld' size='340' side='right'caption='[[5nld]], [[Resolution|resolution]] 0.96Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5nld]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NLD FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5nld]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NLD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NLD FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LBT:ALPHA-LACTOSE'>LBT</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.96Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GRIFIN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900008:alpha-lactose'>PRD_900008</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nld OCA], [http://pdbe.org/5nld PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nld RCSB], [http://www.ebi.ac.uk/pdbsum/5nld PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nld ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nld OCA], [https://pdbe.org/5nld PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nld RCSB], [https://www.ebi.ac.uk/pdbsum/5nld PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nld ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/F1NZ18_CHICK F1NZ18_CHICK] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 5nld" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 5nld" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Galectin 3D structures|Galectin 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Chick]] | + | [[Category: Gallus gallus]] |
- | [[Category: Romero, A]] | + | [[Category: Large Structures]] |
- | [[Category: Ruiz, F M]] | + | [[Category: Romero A]] |
- | [[Category: Galectin related protein]] | + | [[Category: Ruiz FM]] |
- | [[Category: Sugar binding protein]]
| + | |
| Structural highlights
Function
F1NZ18_CHICK
Publication Abstract from PubMed
Despite its natural abundance in lenses of vertebrates the physiological function(s) of the galectin-related inter-fiber protein (GRIFIN) is (are) still unclear. The same holds true for the significance of the unique interspecies (fish/birds vs mammals) variability in the capacity to bind lactose. In solution, ultracentrifugation and small angle X-ray scattering (at concentrations up to 9mg/mL) characterize the protein as compact and stable homodimer without evidence for aggregation. The crystal structure of chicken (C-)GRIFIN at seven pH values from 4.2 to 8.5 is reported, revealing compelling stability. Binding of lactose despite the Arg71Val deviation from the sequence signature of galectins matched the otherwise canonical contact pattern with thermodynamics of an enthalpically driven process. Upon lactose accommodation, the side chain of Arg50 is shifted for hydrogen bonding to the 3-hydroxyl of glucose. No evidence for a further ligand-dependent structural alteration was obtained in solution by measuring hydrogen/deuterium exchange mass spectrometrically in peptic fingerprints. The introduction of the Asn48Lys mutation, characteristic for mammalian GRIFINs that have lost lectin activity, lets labeled C-GRIFIN maintain capacity to stain tissue sections. Binding is no longer inhibitable by lactose, as seen for the wild-type protein. These results establish the basis for detailed structure-activity considerations and are a step to complete the structural description of all seven members of the galectin network in chicken.
Chicken GRIFIN: Structural characterization in crystals and in solution.,Ruiz FM, Gilles U, Ludwig AK, Sehad C, Shiao TC, Garcia Caballero G, Kaltner H, Lindner I, Roy R, Reusch D, Romero A, Gabius HJ Biochimie. 2018 Mar;146:127-138. doi: 10.1016/j.biochi.2017.12.003. Epub 2017 Dec, 15. PMID:29248541[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Ruiz FM, Gilles U, Ludwig AK, Sehad C, Shiao TC, Garcia Caballero G, Kaltner H, Lindner I, Roy R, Reusch D, Romero A, Gabius HJ. Chicken GRIFIN: Structural characterization in crystals and in solution. Biochimie. 2018 Mar;146:127-138. doi: 10.1016/j.biochi.2017.12.003. Epub 2017 Dec, 15. PMID:29248541 doi:http://dx.doi.org/10.1016/j.biochi.2017.12.003
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