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| ==Crystal Structure of Methanol dehydrogenase from Methylophaga aminisulfidivorans== | | ==Crystal Structure of Methanol dehydrogenase from Methylophaga aminisulfidivorans== |
- | <StructureSection load='5xm3' size='340' side='right' caption='[[5xm3]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='5xm3' size='340' side='right'caption='[[5xm3]], [[Resolution|resolution]] 1.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5xm3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Methylophaga_aminisulfidivorans_mp Methylophaga aminisulfidivorans mp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XM3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XM3 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5xm3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylophaga_aminisulfidivorans_MP Methylophaga aminisulfidivorans MP]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XM3 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.701Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MAMP_01209 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1026882 Methylophaga aminisulfidivorans MP]), MAMP_01202 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1026882 Methylophaga aminisulfidivorans MP])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methanol_dehydrogenase_(cytochrome_c) Methanol dehydrogenase (cytochrome c)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.2.7 1.1.2.7] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xm3 OCA], [https://pdbe.org/5xm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xm3 RCSB], [https://www.ebi.ac.uk/pdbsum/5xm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xm3 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xm3 OCA], [http://pdbe.org/5xm3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xm3 RCSB], [http://www.ebi.ac.uk/pdbsum/5xm3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xm3 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/A3FJ51_9GAMM A3FJ51_9GAMM]] Catalyzes the oxidation of primary alcohols including methanol.[PIRNR:PIRNR029163] | + | [https://www.uniprot.org/uniprot/A3FJ48_9GAMM A3FJ48_9GAMM] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 5xm3" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 5xm3" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Methanol dehydrogenase|Methanol dehydrogenase]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Methylophaga aminisulfidivorans mp]] | + | [[Category: Large Structures]] |
- | [[Category: Cao, T P]]
| + | [[Category: Methylophaga aminisulfidivorans MP]] |
- | [[Category: Choi, J M]]
| + | [[Category: Cao TP]] |
- | [[Category: Lee, S H]]
| + | [[Category: Choi JM]] |
- | [[Category: Marine]]
| + | [[Category: Lee SH]] |
- | [[Category: Methanol dehydrogenase]]
| + | |
- | [[Category: Methylophaga]] | + | |
- | [[Category: Mg++]] | + | |
- | [[Category: Oxidoreductase]] | + | |
- | [[Category: Pyrroloquinoline quinone]] | + | |
| Structural highlights
Function
A3FJ48_9GAMM
Publication Abstract from PubMed
The first crystal structure of a pyrroloquinoline quinone (PQQ)-dependent methanol dehydrogenase (MDH) from a marine methylotrophic bacterium, Methylophaga aminisulfidivorans MP(T) (MDHMas), was determined at 1.7 A resolution. The active form of MDHMas (or MDHIMas) is a heterotetrameric alpha2beta2, where each beta-subunit assembles on one side of each of the alpha-subunits, in a symmetrical fashion, so that two beta-subunits surround the two PQQ-binding pockets on the alpha-subunits. The active site consists of a PQQ molecule surrounded by a beta-propeller fold for each alpha-subunit. Interestingly, the PQQ molecules are coordinated by a Mg(2+) ion, instead of the Ca(2+) ion that is commonly found in the terrestrial MDHI, indicating the efficiency of osmotic balance regulation in the high salt environment. The overall interaction of the beta-subunits with the alpha-subunits appears tighter than that of terrestrial homologues, suggesting the efficient maintenance of MDHIMas integrity in the sea water environment to provide a firm basis for complex formation with MxaJMas or Cyt cL. With the help of the features mentioned above, our research may enable the elucidation of the full molecular mechanism of methanol oxidation by taking advantage of marine bacterium-originated proteins in the methanol oxidizing system (mox), including MxaJ, as the attainment of these proteins from terrestrial bacteria for structural studies has not been successful.
The crystal structure of methanol dehydrogenase, a quinoprotein from the marine methylotrophic bacterium Methylophaga aminisulfidivorans MP(T).,Cao TP, Choi JM, Kim SW, Lee SH J Microbiol. 2018 Feb 28. pii: 10.1007/s12275-018-7483-y. doi:, 10.1007/s12275-018-7483-y. PMID:29492864[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Cao TP, Choi JM, Kim SW, Lee SH. The crystal structure of methanol dehydrogenase, a quinoprotein from the marine methylotrophic bacterium Methylophaga aminisulfidivorans MP(T). J Microbiol. 2018 Feb 28. pii: 10.1007/s12275-018-7483-y. doi:, 10.1007/s12275-018-7483-y. PMID:29492864 doi:http://dx.doi.org/10.1007/s12275-018-7483-y
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