This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5xmp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:06, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5xmp' size='340' side='right'caption='[[5xmp]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='5xmp' size='340' side='right'caption='[[5xmp]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5xmp]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XMP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5XMP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5xmp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XMP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XMP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8A3:4-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-(trifluoromethyl)phenyl]-~{N}-methyl-~{N}-[2,2,2-tris(fluoranyl)ethyl]benzenesulfonamide'>8A3</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycine_hydroxymethyltransferase Glycine hydroxymethyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.1 2.1.2.1] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8A3:4-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-(trifluoromethyl)phenyl]-~{N}-methyl-~{N}-[2,2,2-tris(fluoranyl)ethyl]benzenesulfonamide'>8A3</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5xmp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xmp OCA], [http://pdbe.org/5xmp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xmp RCSB], [http://www.ebi.ac.uk/pdbsum/5xmp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xmp ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xmp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xmp OCA], [https://pdbe.org/5xmp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xmp RCSB], [https://www.ebi.ac.uk/pdbsum/5xmp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xmp ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A5K8L9_PLAVS A5K8L9_PLAVS]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 21:
==See Also==
==See Also==
-
*[[Serine hydroxymethyltransferase|Serine hydroxymethyltransferase]]
+
*[[Serine hydroxymethyltransferase 3D structures|Serine hydroxymethyltransferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Glycine hydroxymethyltransferase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Chitnumsub, P]]
+
[[Category: Plasmodium vivax]]
-
[[Category: Diederich, F]]
+
[[Category: Chitnumsub P]]
-
[[Category: Jaruwat, A]]
+
[[Category: Diederich F]]
-
[[Category: Leartsakulpanich, U]]
+
[[Category: Jaruwat A]]
-
[[Category: Schwertz, G]]
+
[[Category: Leartsakulpanich U]]
-
[[Category: Alpha and beta protein]]
+
[[Category: Schwertz G]]
-
[[Category: Methyltransferase activity]]
+
-
[[Category: Transferase-transferase inhibitor complex]]
+

Current revision

Plasmodium vivax SHMT(C346A) bound with PLP-glycine and MF057

PDB ID 5xmp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5xmp"
Personal tools