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| <StructureSection load='5xwl' size='340' side='right'caption='[[5xwl]], [[Resolution|resolution]] 2.10Å' scene=''> | | <StructureSection load='5xwl' size='340' side='right'caption='[[5xwl]], [[Resolution|resolution]] 2.10Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5xwl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XWL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5XWL FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5xwl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Capsicum_annuum Capsicum annuum] and [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XWL FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xwl OCA], [https://pdbe.org/5xwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xwl RCSB], [https://www.ebi.ac.uk/pdbsum/5xwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xwl ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5xwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xwl OCA], [http://pdbe.org/5xwl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xwl RCSB], [http://www.ebi.ac.uk/pdbsum/5xwl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xwl ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/TRYP_PIG TRYP_PIG] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Capsicum annuum]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
| [[Category: Sus scrofa]] | | [[Category: Sus scrofa]] |
- | [[Category: Trypsin]]
| + | [[Category: Bhoite AS]] |
- | [[Category: Bhoite, A S]] | + | [[Category: Giri AP]] |
- | [[Category: Giri, A P]] | + | [[Category: Kulkarni KA]] |
- | [[Category: Kulkarni, K A]] | + | [[Category: Saikhedkar NS]] |
- | [[Category: Saikhedkar, N S]] | + | |
- | [[Category: Complex]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Hydrolase-hydrolase inhibitor complex]]
| + | |
- | [[Category: Inhibitor]]
| + | |
- | [[Category: Protease]]
| + | |
| Structural highlights
Function
TRYP_PIG
Publication Abstract from PubMed
Potato type II protease inhibitors (Pin-II PIs) impede the growth of lepidopteran insects by inhibiting serine protease-like enzymes in the larval gut. The three amino acid reactive centre loop (RCL) of these proteinaceous inhibitors is crucial for protease binding and is conserved across the Pin-II family. However, the molecular mechanism and inhibitory potential of the RCL tripeptides in isolation of the native protein has remained elusive. In this study, six peptides corresponding to the RCLs of the predominant Pin-II PIs were identified, synthesized and evaluated for in vitro and in vivo inhibitory activity against serine proteases of the polyphagous insect, Helicoverpa armigera. RCL peptides with sequences PRN, PRY and TRE were found to be potent inhibitors that adversely affected the growth and development of H. armigera. The binding mechanism and differential affinity of the RCL peptides with serine proteases was delineated by crystal structures of complexes of the RCL peptides with trypsin. Residues P1 and P2 of the inhibitors play a crucial role in the interaction and specificity of these inhibitors. Important features of RCL peptides like higher inhibition of insect proteases, enhanced efficacy at alkaline gut pH, longer retention and high stability in insect gut make them suitable molecules for the development of sustainable pest management strategies for crop protection.
Tripeptides derived from reactive centre loop of potato type II protease inhibitors preferentially inhibit midgut proteases of Helicoverpa armigera.,Saikhedkar NS, Joshi RS, Bhoite AS, Mohandasan R, Yadav AK, Fernandes M, Kulkarni KA, Giri AP Insect Biochem Mol Biol. 2018 Feb 25;95:17-25. doi: 10.1016/j.ibmb.2018.02.001. PMID:29486250[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Saikhedkar NS, Joshi RS, Bhoite AS, Mohandasan R, Yadav AK, Fernandes M, Kulkarni KA, Giri AP. Tripeptides derived from reactive centre loop of potato type II protease inhibitors preferentially inhibit midgut proteases of Helicoverpa armigera. Insect Biochem Mol Biol. 2018 Feb 25;95:17-25. doi: 10.1016/j.ibmb.2018.02.001. PMID:29486250 doi:http://dx.doi.org/10.1016/j.ibmb.2018.02.001
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