This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ygx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:29, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5ygx' size='340' side='right'caption='[[5ygx]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='5ygx' size='340' side='right'caption='[[5ygx]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ygx]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YGX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YGX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ygx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YGX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YGX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0B5:~{N}-[3-[(4~{R},5~{R},6~{S})-2-azanyl-6-[1,1-bis(fluoranyl)ethyl]-5-fluoranyl-4-methyl-5,6-dihydro-1,3-oxazin-4-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide'>0B5</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Memapsin_2 Memapsin 2], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.46 3.4.23.46] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0B5:~{N}-[3-[(4~{R},5~{R},6~{S})-2-azanyl-6-[1,1-bis(fluoranyl)ethyl]-5-fluoranyl-4-methyl-5,6-dihydro-1,3-oxazin-4-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide'>0B5</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ygx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ygx OCA], [http://pdbe.org/5ygx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ygx RCSB], [http://www.ebi.ac.uk/pdbsum/5ygx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ygx ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ygx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ygx OCA], [https://pdbe.org/5ygx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ygx RCSB], [https://www.ebi.ac.uk/pdbsum/5ygx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ygx ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN]] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
+
[https://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 26: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Memapsin 2]]
+
[[Category: Ando S]]
-
[[Category: Ando, S]]
+
[[Category: Asada N]]
-
[[Category: Asada, N]]
+
[[Category: Borghys H]]
-
[[Category: Borghys, H]]
+
[[Category: Dhuyvetter D]]
-
[[Category: Dhuyvetter, D]]
+
[[Category: Fuchino K]]
-
[[Category: Fuchino, K]]
+
[[Category: Fukushima T]]
-
[[Category: Fukushima, T]]
+
[[Category: Gijsen H]]
-
[[Category: Gijsen, H]]
+
[[Category: Hasegawa T]]
-
[[Category: Hasegawa, T]]
+
[[Category: Hosono M]]
-
[[Category: Hosono, M]]
+
[[Category: Iso Y]]
-
[[Category: Iso, Y]]
+
[[Category: Kido Y]]
-
[[Category: Kido, Y]]
+
[[Category: Komano K]]
-
[[Category: Komano, K]]
+
[[Category: Kusakabe K]]
-
[[Category: Kusakabe, K]]
+
[[Category: Nakahara K]]
-
[[Category: Nakahara, K]]
+
[[Category: Ogawa M]]
-
[[Category: Ogawa, M]]
+
[[Category: Ohnishi S]]
-
[[Category: Ohnishi, S]]
+
[[Category: Sakaguchi G]]
-
[[Category: Sakaguchi, G]]
+
[[Category: Sako Y]]
-
[[Category: Sako, Y]]
+
[[Category: Tadano G]]
-
[[Category: Tadano, G]]
+
[[Category: Unemura C]]
-
[[Category: Unemura, C]]
+
[[Category: Yamamoto T]]
-
[[Category: Yamamoto, T]]
+
[[Category: Yamano Y]]
-
[[Category: Yamano, Y]]
+
-
[[Category: Beta secretase]]
+
-
[[Category: Hydrolase-inhibitor complex]]
+

Current revision

Structure of BACE1 in complex with N-(3-((4R,5R,6S)-2-amino-6-(1,1-difluoroethyl)-5-fluoro-4-methyl-5,6-dihydro-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide

PDB ID 5ygx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools