5ygy
From Proteopedia
(Difference between revisions)
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==Crystal Structure of BACE1 in complex with (S)-N-(3-(2-amino-6-(fluoromethyl)-4 -methyl-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-cyanopicolinamide== | ==Crystal Structure of BACE1 in complex with (S)-N-(3-(2-amino-6-(fluoromethyl)-4 -methyl-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-cyanopicolinamide== | ||
| - | <StructureSection load='5ygy' size='340' side='right' caption='[[5ygy]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='5ygy' size='340' side='right'caption='[[5ygy]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5ygy]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5ygy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YGY FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0B6:~{N}-[3-[(4~{S})-2-azanyl-6-(fluoranylmethyl)-4-methyl-1,3-oxazin-4-yl]-4-fluoranyl-phenyl]-5-cyano-pyridine-2-carboxamide'>0B6</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0B6:~{N}-[3-[(4~{S})-2-azanyl-6-(fluoranylmethyl)-4-methyl-1,3-oxazin-4-yl]-4-fluoranyl-phenyl]-5-cyano-pyridine-2-carboxamide'>0B6</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ygy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ygy OCA], [https://pdbe.org/5ygy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ygy RCSB], [https://www.ebi.ac.uk/pdbsum/5ygy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ygy ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Ando | + | [[Category: Ando S]] |
| - | [[Category: Borghys | + | [[Category: Borghys H]] |
| - | [[Category: Dhuyvetter | + | [[Category: Dhuyvetter D]] |
| - | [[Category: Fuchino | + | [[Category: Fuchino K]] |
| - | [[Category: Fukushima | + | [[Category: Fukushima T]] |
| - | [[Category: Gijsen | + | [[Category: Gijsen H]] |
| - | [[Category: Hiroyama | + | [[Category: Hiroyama S]] |
| - | [[Category: Hosono | + | [[Category: Hosono M]] |
| - | [[Category: Iso | + | [[Category: Iso Y]] |
| - | [[Category: Ito | + | [[Category: Ito H]] |
| - | [[Category: Kido | + | [[Category: Kido Y]] |
| - | [[Category: Komano | + | [[Category: Komano K]] |
| - | [[Category: Koyabu | + | [[Category: Koyabu K]] |
| - | [[Category: Kurose | + | [[Category: Kurose N]] |
| - | [[Category: Kusakabe | + | [[Category: Kusakabe K]] |
| - | [[Category: Masui | + | [[Category: Masui M]] |
| - | [[Category: Mitsuoka | + | [[Category: Mitsuoka Y]] |
| - | [[Category: Miyajima | + | [[Category: Miyajima H]] |
| - | [[Category: Ogawa | + | [[Category: Ogawa M]] |
| - | [[Category: Ohnishi | + | [[Category: Ohnishi S]] |
| - | [[Category: Sakaguchi | + | [[Category: Sakaguchi G]] |
| - | [[Category: Unemura | + | [[Category: Unemura C]] |
| - | [[Category: Yamamoto | + | [[Category: Yamamoto T]] |
| - | [[Category: Yamano | + | [[Category: Yamano Y]] |
| - | [[Category: Yoshida | + | [[Category: Yoshida S]] |
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of BACE1 in complex with (S)-N-(3-(2-amino-6-(fluoromethyl)-4 -methyl-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-cyanopicolinamide
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Categories: Homo sapiens | Large Structures | Ando S | Borghys H | Dhuyvetter D | Fuchino K | Fukushima T | Gijsen H | Hiroyama S | Hosono M | Iso Y | Ito H | Kido Y | Komano K | Koyabu K | Kurose N | Kusakabe K | Masui M | Mitsuoka Y | Miyajima H | Ogawa M | Ohnishi S | Sakaguchi G | Unemura C | Yamamoto T | Yamano Y | Yoshida S
