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5ytz

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Current revision (08:37, 22 November 2023) (edit) (undo)
 
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<StructureSection load='5ytz' size='340' side='right'caption='[[5ytz]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
<StructureSection load='5ytz' size='340' side='right'caption='[[5ytz]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5ytz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_echinatus Streptomyces echinatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YTZ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YTZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5ytz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_echinatus Streptomyces echinatus] and [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YTZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YTZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=QUI:2-CARBOXYQUINOXALINE'>QUI</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene>, <scene name='pdbligand=N2C:N,S-DIMETHYLCYSTEINE'>N2C</scene>, <scene name='pdbligand=NCY:N-METHYLCYSTEINE'>NCY</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene>, <scene name='pdbligand=N2C:N,S-DIMETHYLCYSTEINE'>N2C</scene>, <scene name='pdbligand=NCY:N-METHYLCYSTEINE'>NCY</scene>, <scene name='pdbligand=QUI:2-CARBOXYQUINOXALINE'>QUI</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ytz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ytz OCA], [http://pdbe.org/5ytz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ytz RCSB], [http://www.ebi.ac.uk/pdbsum/5ytz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ytz ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ytz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ytz OCA], [https://pdbe.org/5ytz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ytz RCSB], [https://www.ebi.ac.uk/pdbsum/5ytz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ytz ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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</div>
</div>
<div class="pdbe-citations 5ytz" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ytz" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Hypoxia-Inducible Factors|Hypoxia-Inducible Factors]]
== References ==
== References ==
<references/>
<references/>
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[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Streptomyces echinatus]]
[[Category: Streptomyces echinatus]]
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[[Category: Hou, M H]]
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[[Category: Unidentified]]
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[[Category: Kao, Y F]]
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[[Category: Hou MH]]
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[[Category: Wu, P C]]
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[[Category: Kao YF]]
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[[Category: Antibiotic]]
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[[Category: Wu PC]]
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[[Category: Antibiotic-dna complex]]
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[[Category: Dna intercalator]]
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[[Category: Echinomycin]]
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[[Category: Echinomycin-dna complex]]
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[[Category: Mismatched base pair]]
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[[Category: Non-canonical duplex structure]]
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[[Category: Pyrimidine-pyrimidine base pairing]]
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[[Category: T-t mismatch]]
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Current revision

Crystal structure of echinomycin-d(ACGTCGT)2 complex

PDB ID 5ytz

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OCA

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