5yx1

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Current revision (08:39, 22 November 2023) (edit) (undo)
 
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<StructureSection load='5yx1' size='340' side='right'caption='[[5yx1]], [[Resolution|resolution]] 1.39&Aring;' scene=''>
<StructureSection load='5yx1' size='340' side='right'caption='[[5yx1]], [[Resolution|resolution]] 1.39&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5yx1]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YX1 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5YX1 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5yx1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YX1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YX1 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UX4:ethyl+4-[(8R)-3,8-dimethyl-4-oxo-4,6,7,8,9,10-hexahydrothieno[2,3 4,5]pyrimido[1,2-a]azepin-2-yl]carbamoylpiperazine-1-carboxylate'>UX4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.39&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yx1 OCA], [http://pdbe.org/5yx1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yx1 RCSB], [http://www.ebi.ac.uk/pdbsum/5yx1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yx1 ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UX4:ethyl+4-[(8R)-3,8-dimethyl-4-oxo-4,6,7,8,9,10-hexahydrothieno[2,3 4,5]pyrimido[1,2-a]azepin-2-yl]carbamoylpiperazine-1-carboxylate'>UX4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yx1 OCA], [https://pdbe.org/5yx1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yx1 RCSB], [https://www.ebi.ac.uk/pdbsum/5yx1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yx1 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/HPGDS_HUMAN HPGDS_HUMAN]] Bifunctional enzyme which catalyzes both the conversion of PGH2 to PGD2, a prostaglandin involved in smooth muscle contraction/relaxation and a potent inhibitor of platelet aggregation, and the conjugation of glutathione with a wide range of aryl halides and organic isothiocyanates. Also exhibits low glutathione-peroxidase activity towards cumene hydroperoxide.<ref>PMID:10824118</ref> <ref>PMID:11672424</ref> <ref>PMID:9425264</ref> <ref>PMID:9353279</ref> <ref>PMID:12627223</ref> <ref>PMID:15113825</ref> <ref>PMID:16547010</ref> <ref>PMID:19939518</ref>
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[https://www.uniprot.org/uniprot/HPGDS_HUMAN HPGDS_HUMAN] Bifunctional enzyme which catalyzes both the conversion of PGH2 to PGD2, a prostaglandin involved in smooth muscle contraction/relaxation and a potent inhibitor of platelet aggregation, and the conjugation of glutathione with a wide range of aryl halides and organic isothiocyanates. Also exhibits low glutathione-peroxidase activity towards cumene hydroperoxide.<ref>PMID:10824118</ref> <ref>PMID:11672424</ref> <ref>PMID:9425264</ref> <ref>PMID:9353279</ref> <ref>PMID:12627223</ref> <ref>PMID:15113825</ref> <ref>PMID:16547010</ref> <ref>PMID:19939518</ref>
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==See Also==
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*[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Aritake, K]]
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[[Category: Aritake K]]
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[[Category: Furubayashi, N]]
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[[Category: Furubayashi N]]
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[[Category: Inaka, K]]
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[[Category: Inaka K]]
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[[Category: Kamo, M]]
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[[Category: Kamo M]]
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[[Category: Takaya, D]]
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[[Category: Takaya D]]
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[[Category: Tanaka, A]]
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[[Category: Tanaka A]]
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[[Category: Urade, Y]]
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[[Category: Urade Y]]
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[[Category: Inhibitor]]
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[[Category: Prostaglandin]]
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[[Category: Synthase]]
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[[Category: Transferase]]
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[[Category: Transferase-transferase inhibitor complex]]
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Current revision

Crystal structure of hematopoietic prostaglandin D synthase in complex with U004

PDB ID 5yx1

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OCA

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