5z0r

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Current revision (08:43, 22 November 2023) (edit) (undo)
 
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==Structural insight into the Zika virus capsid encapsulating the viral genome==
==Structural insight into the Zika virus capsid encapsulating the viral genome==
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<StructureSection load='5z0r' size='340' side='right' caption='[[5z0r]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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<StructureSection load='5z0r' size='340' side='right'caption='[[5z0r]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5z0r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Zikv Zikv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z0R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z0R FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5z0r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z0R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Z0R FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAL:MALTOSE'>MAL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ECBD_4002 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=64320 ZIKV])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z0r OCA], [http://pdbe.org/5z0r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z0r RCSB], [http://www.ebi.ac.uk/pdbsum/5z0r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z0r ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5z0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z0r OCA], [https://pdbe.org/5z0r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5z0r RCSB], [https://www.ebi.ac.uk/pdbsum/5z0r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5z0r ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/A0A140NCD0_ECOBD A0A140NCD0_ECOBD]] Involved in the high-affinity maltose membrane transport system. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.[RuleBase:RU365005]
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[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.[https://www.uniprot.org/uniprot/POLG_ZIKV POLG_ZIKV] Protein C: Encapsulates the genomic RNA.[UniProtKB:P17763] prM: Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated.[UniProtKB:P17763] Envelope protein E: Binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes.[UniProtKB:P17763] Non-structural protein 1: Involved in virus replication and regulation of the innate immune response.[UniProtKB:P17763] Non-structural protein 2A: May be involved viral RNA replication and capsid assembly.[UniProtKB:P09732] Non-structural protein 4A: Induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the helicase region of Serine protease NS3 chain.[UniProtKB:P17763] Peptide 2k: Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[UniProtKB:P17763] Non-structural protein 4B: Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway.[UniProtKB:P17763]
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==See Also==
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Zikv]]
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[[Category: Large Structures]]
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[[Category: Chen, C]]
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[[Category: Chen C]]
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[[Category: Duan, Y]]
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[[Category: Duan Y]]
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[[Category: Ji, X]]
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[[Category: Ji X]]
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[[Category: Li, T]]
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[[Category: Li T]]
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[[Category: Mi, K]]
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[[Category: Mi K]]
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[[Category: Wang, Z]]
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[[Category: Wang Z]]
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[[Category: Wu, C]]
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[[Category: Wu C]]
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[[Category: Xue, X]]
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[[Category: Xue X]]
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[[Category: Yang, H]]
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[[Category: Yang H]]
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[[Category: Yang, K]]
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[[Category: Yang K]]
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[[Category: Yang, X]]
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[[Category: Yang X]]
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[[Category: Zhang, T]]
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[[Category: Zhang T]]
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[[Category: Zhao, Q]]
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[[Category: Zhao Q]]
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[[Category: Viral protein]]
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[[Category: Zika virus capsid]]
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Current revision

Structural insight into the Zika virus capsid encapsulating the viral genome

PDB ID 5z0r

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