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| ==The structure of DSZS acyltransferase with carrier protein== | | ==The structure of DSZS acyltransferase with carrier protein== |
- | <StructureSection load='5zk4' size='340' side='right' caption='[[5zk4]], [[Resolution|resolution]] 2.03Å' scene=''> | + | <StructureSection load='5zk4' size='340' side='right'caption='[[5zk4]], [[Resolution|resolution]] 2.03Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5zk4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"polyangium_compositum"_thaxter_1904 "polyangium compositum" thaxter 1904]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZK4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZK4 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5zk4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sorangium_cellulosum Sorangium cellulosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZK4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZK4 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9EF:N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide'>9EF</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dszD, disD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56 "Polyangium compositum" Thaxter 1904]), dszA, disA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56 "Polyangium compositum" Thaxter 1904])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9EF:N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide'>9EF</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zk4 OCA], [http://pdbe.org/5zk4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zk4 RCSB], [http://www.ebi.ac.uk/pdbsum/5zk4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zk4 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zk4 OCA], [https://pdbe.org/5zk4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zk4 RCSB], [https://www.ebi.ac.uk/pdbsum/5zk4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zk4 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q4U443_SORCE Q4U443_SORCE] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Polyangium compositum thaxter 1904]] | + | [[Category: Large Structures]] |
- | [[Category: Eguchi, T]] | + | [[Category: Sorangium cellulosum]] |
- | [[Category: Kudo, F]] | + | [[Category: Eguchi T]] |
- | [[Category: Miyanaga, A]] | + | [[Category: Kudo F]] |
- | [[Category: Ouchi, R]] | + | [[Category: Miyanaga A]] |
- | [[Category: Acyl carrier protein]]
| + | [[Category: Ouchi R]] |
- | [[Category: Polyketide biosynthesis]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
Q4U443_SORCE
Publication Abstract from PubMed
Acyltransferases (ATs) are responsible for the selection and incorporation of acyl building blocks in the biosynthesis of various polyketide natural products. The trans-AT modular polyketide synthases have a discrete trans-acting AT for the loading of an acyl unit onto the acyl carrier protein (ACP) located within each module. Despite the importance of protein-protein interactions between ATs and ACPs in trans-AT assembly lines, the dynamic actions of ACPs and trans-acting ATs remain largely uncharacterized because of the inherently transient nature of ACP-enzyme interactions. Herein, we report the crystal structure of the AT-ACP complex of disorazole trans-AT polyketide synthase. We used a bromoacetamide pantetheine cross-linking probe in combination with a Cys mutation to trap the transient AT-ACP complex, allowing the determination of the crystal structure of the disorazole AT-ACP complex at 2.03 A resolution. On the basis of the cross-linked AT-ACP complex structure, ACP residues recognized by trans-acting AT were identified and validated by mutational studies, which demonstrated that the disorazole AT recognizes the loop 1 and helix III' residues of disorazole ACP. The disorazole AT-ACP complex structure presents a foundation for defining the dynamic processes associated with trans-acting ATs and provides detailed mechanistic insights into their ability to recognize ACPs.
Structural Basis of Protein-Protein Interactions between a trans-Acting Acyltransferase and Acyl Carrier Protein in Polyketide Disorazole Biosynthesis.,Miyanaga A, Ouchi R, Ishikawa F, Goto E, Tanabe G, Kudo F, Eguchi T J Am Chem Soc. 2018 Jun 13. doi: 10.1021/jacs.8b04162. PMID:29870659[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Miyanaga A, Ouchi R, Ishikawa F, Goto E, Tanabe G, Kudo F, Eguchi T. Structural Basis of Protein-Protein Interactions between a trans-Acting Acyltransferase and Acyl Carrier Protein in Polyketide Disorazole Biosynthesis. J Am Chem Soc. 2018 Jun 13. doi: 10.1021/jacs.8b04162. PMID:29870659 doi:http://dx.doi.org/10.1021/jacs.8b04162
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