5zle

From Proteopedia

(Difference between revisions)

Current revision

Human duodenal cytochrome b (Dcytb) in substrate free form

Structural highlights

5zle is a 1 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.6Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CYBR1_HUMAN Ferric-chelate reductase that reduces Fe(3+) to Fe(2+). Present at the brush border of duodenal enterocytes where it probably reduces dietary Fe(3+) thereby facilitating its transport into the mucosal cells. Uses ascorbate as electron donor. May be involved in extracellular ascorbate recycling in erythrocyte membranes. May also act as a ferrireductase in airway epithelial cells.^[1] ^[2] ^[3] ^[4]

Publication Abstract from PubMed

Dietary iron absorption is regulated by duodenal cytochrome b (Dcytb), an integral membrane protein that catalyzes reduction of nonheme Fe(3+) by electron transfer from ascorbate across the membrane. This step is essential to enable iron uptake by the divalent metal transporter. Here we report the crystallographic structures of human Dcytb and its complex with ascorbate and Zn(2+). Each monomer of the homodimeric protein possesses cytoplasmic and apical heme groups, as well as cytoplasmic and apical ascorbate-binding sites located adjacent to each heme. Zn(2+) coordinates to two hydroxyl groups of the apical ascorbate and to a histidine residue. Biochemical analysis indicates that Fe(3+) competes with Zn(2+) for this binding site. These results provide a structural basis for the mechanism by which Fe(3+) uptake is promoted by reducing agents and should facilitate structure-based development of improved agents for absorption of orally administered iron.

Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.,Ganasen M, Togashi H, Takeda H, Asakura H, Tosha T, Yamashita K, Hirata K, Nariai Y, Urano T, Yuan X, Hamza I, Mauk AG, Shiro Y, Sugimoto H, Sawai H Commun Biol. 2018 Aug 17;1:120. doi: 10.1038/s42003-018-0121-8. eCollection 2018. PMID:30272000^[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Zaahl MG, Merryweather-Clarke AT, Kotze MJ, van der Merwe S, Warnich L, Robson KJ. Gene symbol: DCYTB/CYBRD1. Disease: primary iron overload. Hum Genet. 2005 Dec;118(3-4):548-9. PMID:16521311
↑ Zaahl MG, Merryweather-Clarke AT, Kotze MJ, van der Merwe S, Warnich L, Robson KJ. Gene symbol: DCYTB/CYBRD1. Disease: primary iron overload. Hum Genet. 2005 Dec;118(3-4):549. PMID:16521312
↑ Su D, May JM, Koury MJ, Asard H. Human erythrocyte membranes contain a cytochrome b561 that may be involved in extracellular ascorbate recycling. J Biol Chem. 2006 Dec 29;281(52):39852-9. Epub 2006 Oct 26. PMID:17068337 doi:http://dx.doi.org/M606543200
↑ Constantine CC, Anderson GJ, Vulpe CD, McLaren CE, Bahlo M, Yeap HL, Gertig DM, Osborne NJ, Bertalli NA, Beckman KB, Chen V, Matak P, McKie AT, Delatycki MB, Olynyk JK, English DR, Southey MC, Giles GG, Hopper JL, Allen KJ, Gurrin LC. A novel association between a SNP in CYBRD1 and serum ferritin levels in a cohort study of HFE hereditary haemochromatosis. Br J Haematol. 2009 Oct;147(1):140-9. doi: 10.1111/j.1365-2141.2009.07843.x. Epub, 2009 Aug 10. PMID:19673882 doi:http://dx.doi.org/10.1111/j.1365-2141.2009.07843.x
↑ Ganasen M, Togashi H, Takeda H, Asakura H, Tosha T, Yamashita K, Hirata K, Nariai Y, Urano T, Yuan X, Hamza I, Mauk AG, Shiro Y, Sugimoto H, Sawai H. Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate. Commun Biol. 2018 Aug 17;1:120. doi: 10.1038/s42003-018-0121-8. eCollection 2018. PMID:30272000 doi:http://dx.doi.org/10.1038/s42003-018-0121-8

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5zle"

@@ Line 3: / Line 3: @@
 <StructureSection load='5zle' size='340' side='right'caption='[[5zle]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5zle]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZLE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZLE FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5zle]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZLE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZLE FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CYBRD1, DCYTB, FRRS3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zle FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zle OCA], [http://pdbe.org/5zle PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zle RCSB], [http://www.ebi.ac.uk/pdbsum/5zle PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zle ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zle FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zle OCA], [https://pdbe.org/5zle PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zle RCSB], [https://www.ebi.ac.uk/pdbsum/5zle PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zle ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CYBR1_HUMAN CYBR1_HUMAN]] Ferric-chelate reductase that reduces Fe(3+) to Fe(2+). Present at the brush border of duodenal enterocytes where it probably reduces dietary Fe(3+) thereby facilitating its transport into the mucosal cells. Uses ascorbate as electron donor. May be involved in extracellular ascorbate recycling in erythrocyte membranes. May also act as a ferrireductase in airway epithelial cells.<ref>PMID:16521311</ref> <ref>PMID:16521312</ref> <ref>PMID:17068337</ref> <ref>PMID:19673882</ref>
+[https://www.uniprot.org/uniprot/CYBR1_HUMAN CYBR1_HUMAN] Ferric-chelate reductase that reduces Fe(3+) to Fe(2+). Present at the brush border of duodenal enterocytes where it probably reduces dietary Fe(3+) thereby facilitating its transport into the mucosal cells. Uses ascorbate as electron donor. May be involved in extracellular ascorbate recycling in erythrocyte membranes. May also act as a ferrireductase in airway epithelial cells.<ref>PMID:16521311</ref> <ref>PMID:16521312</ref> <ref>PMID:17068337</ref> <ref>PMID:19673882</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
 [[Category: Large Structures]]
-[[Category: Ganasen, M]]
+[[Category: Ganasen M]]
-[[Category: Mauk, G A]]
+[[Category: Mauk GA]]
-[[Category: Sawai, H]]
+[[Category: Sawai H]]
-[[Category: Shiro, Y]]
+[[Category: Shiro Y]]
-[[Category: Sugimoto, H]]
+[[Category: Sugimoto H]]
-[[Category: Togashi, H]]
+[[Category: Togashi H]]
-[[Category: Electron transport]]
-[[Category: Oxidoreductase]]

5zle

From Proteopedia

Current revision

Human duodenal cytochrome b (Dcytb) in substrate free form

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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