6inz
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide== | |
+ | <StructureSection load='6inz' size='340' side='right'caption='[[6inz]], [[Resolution|resolution]] 2.29Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6inz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptobacillus_moniliformis_DSM_12112 Streptobacillus moniliformis DSM 12112]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6INZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6INZ FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.289Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GCD:4,5-DEHYDRO-D-GLUCURONIC+ACID'>GCD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6inz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6inz OCA], [https://pdbe.org/6inz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6inz RCSB], [https://www.ebi.ac.uk/pdbsum/6inz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6inz ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/D1AWE0_STRM9 D1AWE0_STRM9] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Glycosaminoglycans (GAGs) such as hyaluronan and chondroitin in animal extracellular matrices contain disaccharide-repeating units. In a Gram-negative pathogenic Streptobacillus moniliformis, which belongs to Fusobacteria phylum and resides in rodent oral cavities, the solute-binding protein (Smon0123)-dependent ATP-binding cassette transporter imports unsaturated hyaluronan/chondroitin disaccharides into the cytoplasm after GAG lyase-dependent depolymerization. Here we show substrate recognition of unsaturated hyaluronan disaccharide by Smon0123. Moreover, Smon0123 exhibited no affinity for unsaturated chondroitin disaccharides containing three sulfate groups, distinct from non-sulfated, mono-sulfated, and di-sulfated chondroitin disaccharides previously identified as substrates. Crystal structure of Smon0123 with unsaturated hyaluronan disaccharide demonstrates that several residues, including Trp284 and Glu410, are crucial for binding to unsaturated hyaluronan/chondroitin disaccharides, whereas arrangements of water molecules at binding sites are found to be substrate dependent through comparison with substrate-bound structures determined previously. These residues are well conserved in Smon0123-like proteins of fusobacteria, and probably facilitate the fusobacterial residence in hyaluronan-rich oral cavities. | ||
- | + | Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host.,Oiki S, Sato M, Mikami B, Murata K, Hashimoto W Biosci Biotechnol Biochem. 2019 Oct;83(10):1946-1954. doi: , 10.1080/09168451.2019.1630250. Epub 2019 Jun 16. PMID:31204616<ref>PMID:31204616</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 6inz" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Streptobacillus moniliformis DSM 12112]] | ||
+ | [[Category: Hashimoto W]] | ||
+ | [[Category: Mikami B]] | ||
+ | [[Category: Murata K]] | ||
+ | [[Category: Oiki S]] |
Current revision
Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide
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