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| | <StructureSection load='6j3h' size='340' side='right'caption='[[6j3h]], [[Resolution|resolution]] 2.19Å' scene=''> | | <StructureSection load='6j3h' size='340' side='right'caption='[[6j3h]], [[Resolution|resolution]] 2.19Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6j3h]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cers8 Cers8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6J3H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6J3H FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6j3h]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Gelatoporia_subvermispora_B Gelatoporia subvermispora B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6J3H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6J3H FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.19Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CERSUDRAFT_83044 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=914234 CERS8])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6j3h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6j3h OCA], [http://pdbe.org/6j3h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6j3h RCSB], [http://www.ebi.ac.uk/pdbsum/6j3h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6j3h ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6j3h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6j3h OCA], [https://pdbe.org/6j3h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6j3h RCSB], [https://www.ebi.ac.uk/pdbsum/6j3h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6j3h ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/M2QJS8_CERS8 M2QJS8_CERS8] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6j3h" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6j3h" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Cers8]] | + | [[Category: Gelatoporia subvermispora B]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Katahira, M]] | + | [[Category: Katahira M]] |
| - | [[Category: Kondo, K]] | + | [[Category: Kondo K]] |
| - | [[Category: Mikami, B]] | + | [[Category: Mikami B]] |
| - | [[Category: Nagata, T]] | + | [[Category: Nagata T]] |
| - | [[Category: Osman, W H.W]] | + | [[Category: Osman WHW]] |
| - | [[Category: Saka, N]] | + | [[Category: Saka N]] |
| - | [[Category: Ceriporiopsis subvermispora]]
| + | |
| - | [[Category: Glutathione s-transferase]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
M2QJS8_CERS8
Publication Abstract from PubMed
Ceriporiopsis subvermispora (C. subvermispora) is a selective degrader of lignin in the woody biomass. Glutathione S-transferases (GSTs) are multifunctional enzymes that play important roles in cellular detoxification and metabolism. The crystal structures of a GST of C. subvermispora, CsGST83044, in GSH-free and -bound forms were solved at 1.95 and 2.19A resolution, respectively. The structure of the GSH-bound form revealed that CsGST83044 can be categorized as an atypical-type of GST. In the GSH-bound form of CsGST83044, Asn22, Asn24, and Tyr46 are located closest to the sulfur atom and form hydrogen bonds with the thiol group. The functional mutagenesis indicated that they are critical for the enzymatic activities of CsGST83044. The critical residues of an atypical-type GST belonging to the GSTFuA class were revealed for the first time. A previous study indicated that CsGST83044 and another GST, CsGST63524, differ in substrate preference; CsGST83044 prefers smaller substrates than CsGST63524 for its esterase activity. The GSH-bound pocket of CsGST83044 turns out to be small, which may explain the preference for smaller substrates. Protein engineering of GSTs of C. subvermispora in the light of the obtained insight may pave a path in the future for utilization of the woody biomass.
Identification of key residues for activities of atypical glutathione S-transferase of Ceriporiopsis subvermispora, a selective degrader of lignin in woody biomass, by crystallography and functional mutagenesis.,Osman WHW, Mikami B, Saka N, Kondo K, Lin MI, Nagata T, Katahira M Int J Biol Macromol. 2019 Mar 27;132:222-229. doi:, 10.1016/j.ijbiomac.2019.03.199. PMID:30928378[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Osman WHW, Mikami B, Saka N, Kondo K, Lin MI, Nagata T, Katahira M. Identification of key residues for activities of atypical glutathione S-transferase of Ceriporiopsis subvermispora, a selective degrader of lignin in woody biomass, by crystallography and functional mutagenesis. Int J Biol Macromol. 2019 Mar 27;132:222-229. doi:, 10.1016/j.ijbiomac.2019.03.199. PMID:30928378 doi:http://dx.doi.org/10.1016/j.ijbiomac.2019.03.199
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