6j42

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Current revision (09:59, 22 November 2023) (edit) (undo)
 
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==Crystal Structure of Wild Type KatB, a manganese catalase from Anabaena==
==Crystal Structure of Wild Type KatB, a manganese catalase from Anabaena==
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<StructureSection load='6j42' size='340' side='right'caption='[[6j42]]' scene=''>
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<StructureSection load='6j42' size='340' side='right'caption='[[6j42]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6J42 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6J42 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6j42]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6J42 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6J42 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6j42 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6j42 OCA], [https://pdbe.org/6j42 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6j42 RCSB], [https://www.ebi.ac.uk/pdbsum/6j42 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6j42 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.492&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6j42 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6j42 OCA], [https://pdbe.org/6j42 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6j42 RCSB], [https://www.ebi.ac.uk/pdbsum/6j42 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6j42 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8YSJ5_NOSS1 Q8YSJ5_NOSS1]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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KatB, a salt-inducible Mn-catalase, protects the cyanobacterium Anabaena from salinity/oxidative stress. In this report, we provide distinctive insights into the biological-biochemical function of KatB at the molecular level. Anabaena overexpressing the wild-type KatB protein (KatBWT) detoxified H2 O2 efficiently, showing reduced burden of reactive oxygen species compared with the strain overproducing KatBF2V (wherein F-2 is replaced by V). Correspondingly, the KatBWT protein also displayed several folds more activity than KatBF2V. Interestingly, the KatB variants with large hydrophobic amino acids (F/W/Y) were more compact, showed enhanced activity, and were resistant to thermal/chemical denaturation than variants with smaller residues (G/A/V) at the second position. X-ray crystallography-based analysis showed that F-2 was required for appropriate interactions between two subunits. These contacts provided stability to the hexamer, making it more compact. F-2, through its interaction with F-66 and W-43, formed the proper hydrophobic pocket that held the active site together. Consequently, only residues that supported activity (i.e., F/Y/W) were selected at the second position in Mn-catalases during evolution. This study (a) demonstrates that modification of nonactive site residues can alter the response of catalases to environmental stress and (b) has expanded the scope of amino acids that can be targeted for rational protein engineering in plants.
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Novel molecular insights into the anti-oxidative stress response and structure-function of a salt-inducible cyanobacterial Mn-catalase.,Chakravarty D, Bihani SC, Banerjee M, Ballal A Plant Cell Environ. 2019 Aug;42(8):2508-2521. doi: 10.1111/pce.13563. Epub 2019, Jun 3. PMID:30993731<ref>PMID:30993731</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6j42" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
*[[Cyclophilin 3D structures|Cyclophilin 3D structures]]
*[[Cyclophilin 3D structures|Cyclophilin 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
[[Category: Ballal A]]
[[Category: Ballal A]]
[[Category: Bihani SC]]
[[Category: Bihani SC]]
[[Category: Chakravarty D]]
[[Category: Chakravarty D]]

Current revision

Crystal Structure of Wild Type KatB, a manganese catalase from Anabaena

PDB ID 6j42

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