This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6jgi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:08, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6jgi' size='340' side='right'caption='[[6jgi]], [[Resolution|resolution]] 0.85&Aring;' scene=''>
<StructureSection load='6jgi' size='340' side='right'caption='[[6jgi]], [[Resolution|resolution]] 0.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6jgi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JGI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JGI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6jgi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JGI FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.85&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jgi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jgi OCA], [http://pdbe.org/6jgi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jgi RCSB], [http://www.ebi.ac.uk/pdbsum/6jgi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jgi ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jgi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jgi OCA], [https://pdbe.org/6jgi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jgi RCSB], [https://www.ebi.ac.uk/pdbsum/6jgi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jgi ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+
[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 6jgi" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6jgi" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aeqvi]]
+
[[Category: Aequorea victoria]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Hanazono, Y]]
+
[[Category: Hanazono Y]]
-
[[Category: Miki, K]]
+
[[Category: Miki K]]
-
[[Category: Tai, Y]]
+
[[Category: Tai Y]]
-
[[Category: Takaba, K]]
+
[[Category: Takaba K]]
-
[[Category: Takeda, K]]
+
[[Category: Takeda K]]
-
[[Category: Fluorescent protein]]
+
-
[[Category: Green fluorescent protein]]
+
-
[[Category: Hydrogen]]
+

Current revision

Crystal structure of the S65T/F99S/M153T/V163A variant of GFP at 0.85 A

PDB ID 6jgi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6jgi"
Personal tools