6jki

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Current revision (10:13, 22 November 2023) (edit) (undo)
 
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<StructureSection load='6jki' size='340' side='right'caption='[[6jki]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
<StructureSection load='6jki' size='340' side='right'caption='[[6jki]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6jki]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseab Pseab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JKI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JKI FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6jki]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_UCBPP-PA14 Pseudomonas aeruginosa UCBPP-PA14]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JKI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JKI FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SFG:SINEFUNGIN'>SFG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.59&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trmD, PA14_15990 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208963 PSEAB])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SFG:SINEFUNGIN'>SFG</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(guanine(37)-N(1))-methyltransferase tRNA (guanine(37)-N(1))-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.228 2.1.1.228] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jki OCA], [https://pdbe.org/6jki PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jki RCSB], [https://www.ebi.ac.uk/pdbsum/6jki PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jki ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jki OCA], [http://pdbe.org/6jki PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jki RCSB], [http://www.ebi.ac.uk/pdbsum/6jki PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jki ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/TRMD_PSEAB TRMD_PSEAB]] Specifically methylates guanosine-37 in various tRNAs.
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[https://www.uniprot.org/uniprot/TRMD_PSEAE TRMD_PSEAE] Specifically methylates guanosine-37 in various tRNAs.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 6jki" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6jki" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Pseab]]
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[[Category: Pseudomonas aeruginosa UCBPP-PA14]]
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[[Category: Atichartpongkul, S]]
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[[Category: Atichartpongkul S]]
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[[Category: Chionh, Y H]]
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[[Category: Chionh YH]]
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[[Category: DeMott, M S]]
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[[Category: DeMott MS]]
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[[Category: Dedon, P C]]
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[[Category: Dedon PC]]
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[[Category: Fuangthong, M]]
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[[Category: Fuangthong M]]
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[[Category: Jaroensuk, J]]
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[[Category: Jaroensuk J]]
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[[Category: Lescar, J]]
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[[Category: Lescar J]]
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[[Category: Liew, C W]]
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[[Category: Liew CW]]
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[[Category: McBee, M E]]
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[[Category: McBee ME]]
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[[Category: Mongkolsuk, S]]
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[[Category: Mongkolsuk S]]
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[[Category: Prestwich, E G]]
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[[Category: Prestwich EG]]
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[[Category: Thongdee, N]]
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[[Category: Thongdee N]]
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[[Category: Wong, Y H]]
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[[Category: Wong YH]]
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[[Category: Zhong, W H]]
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[[Category: Zhong WH]]
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[[Category: Pseudomonas aerugiona]]
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[[Category: Transferase]]
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[[Category: Trmd]]
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Current revision

Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa

PDB ID 6jki

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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