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| | <StructureSection load='6k3d' size='340' side='right'caption='[[6k3d]], [[Resolution|resolution]] 1.92Å' scene=''> | | <StructureSection load='6k3d' size='340' side='right'caption='[[6k3d]], [[Resolution|resolution]] 1.92Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6k3d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrae Pyrae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K3D FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6k3d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_aerophilum_str._IM2 Pyrobaculum aerophilum str. IM2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K3D FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2O:CU-O-CU+LINKAGE'>C2O</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.919Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3aw5|3aw5]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2O:CU-O-CU+LINKAGE'>C2O</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAE1888 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=178306 PYRAE])</td></tr>
| + | |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k3d OCA], [https://pdbe.org/6k3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k3d RCSB], [https://www.ebi.ac.uk/pdbsum/6k3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k3d ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k3d OCA], [https://pdbe.org/6k3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k3d RCSB], [https://www.ebi.ac.uk/pdbsum/6k3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k3d ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q8ZWA8_PYRAE Q8ZWA8_PYRAE] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Pyrae]] | + | [[Category: Pyrobaculum aerophilum str. IM2]] |
| - | [[Category: Ohshida, T]] | + | [[Category: Ohshida T]] |
| - | [[Category: Ohshima, T]] | + | [[Category: Ohshima T]] |
| - | [[Category: Sakuraba, H]] | + | [[Category: Sakuraba H]] |
| - | [[Category: Satomura, T]] | + | [[Category: Satomura T]] |
| - | [[Category: Yoneda, K]] | + | [[Category: Yoneda K]] |
| - | [[Category: Cupredoxin-like domain]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
Q8ZWA8_PYRAE
Publication Abstract from PubMed
Although multicopper oxidase from the hyperthermophilic archaeon Pyrobaculum aerophilum (McoP) can be particularly useful in biotechnological applications, e.g., as a specific catalyst at the biocathode of biofuel cells (BFCs), owing to its high stability against extremely high temperatures and across a wide range of pH values, this application potential remains limited due to the enzyme's low catalytic activity. A directed evolution strategy was conducted to improve McoP catalytic activity, and the No. 571 mutant containing four amino acid substitutions was identified, with specific activity approximately 9-fold higher than that of the wild type enzyme. Among the substitutions, the single amino acid mutant F290I was essential in enhancing catalytic activity, with a specific activity approximately 12-fold higher than that of the wild type enzyme. F290I thermostability and pH stability were notably comparable with values obtained for the wild type. Crystal structure analysis suggested that the F290I mutant increased loop flexibility near the T1 Cu center, and affected electron transfer between the enzyme and substrate. Additionally, electric current density of the F290I mutant-immobilized electrode was 7-fold higher than that of the wild type-immobilized one. These results indicated that F290I mutant was a superior catalyst with potential in practical biotechnological applications.
Activity enhancement of multicopper oxidase from a hyperthermophile via directed evolution, and its application as the element of a high performance biocathode.,Satomura T, Hirano T, Inagaki K, Horinaga K, Takamura E, Sakamoto H, Ohshida T, Ohshima T, Sakuraba H, Suye SI J Biotechnol. 2021 Jan 10;325:226-232. doi: 10.1016/j.jbiotec.2020.10.019. Epub, 2020 Oct 22. PMID:33164755[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Satomura T, Hirano T, Inagaki K, Horinaga K, Takamura E, Sakamoto H, Ohshida T, Ohshima T, Sakuraba H, Suye SI. Activity enhancement of multicopper oxidase from a hyperthermophile via directed evolution, and its application as the element of a high performance biocathode. J Biotechnol. 2021 Jan 10;325:226-232. doi: 10.1016/j.jbiotec.2020.10.019. Epub, 2020 Oct 22. PMID:33164755 doi:http://dx.doi.org/10.1016/j.jbiotec.2020.10.019
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