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| <StructureSection load='6l8q' size='340' side='right'caption='[[6l8q]], [[Resolution|resolution]] 3.10Å' scene=''> | | <StructureSection load='6l8q' size='340' side='right'caption='[[6l8q]], [[Resolution|resolution]] 3.10Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6l8q]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/David's_myotis David's myotis] and [http://en.wikipedia.org/wiki/Mers Mers]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L8Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6L8Q FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6l8q]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus] and [https://en.wikipedia.org/wiki/Myotis_davidii Myotis davidii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6L8Q FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MDA_GLEAN10024208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=225400 David's myotis])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6l8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l8q OCA], [http://pdbe.org/6l8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l8q RCSB], [http://www.ebi.ac.uk/pdbsum/6l8q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l8q ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6l8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l8q OCA], [https://pdbe.org/6l8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6l8q RCSB], [https://www.ebi.ac.uk/pdbsum/6l8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6l8q ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/A0A0A0Q7F3_9BETC A0A0A0Q7F3_9BETC]] Spike protein S1: attaches the virion to the cell membrane by interacting with host receptor, initiating the infection.[HAMAP-Rule:MF_04099] Spike protein S2': Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099] Spike protein S2: mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] | + | [https://www.uniprot.org/uniprot/L5LQ33_MYODS L5LQ33_MYODS] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 6l8q" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6l8q" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Dipeptidyl peptidase 3D structures|Dipeptidyl peptidase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: David's myotis]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Mers]] | + | [[Category: Middle East respiratory syndrome-related coronavirus]] |
- | [[Category: Yuan, Y]] | + | [[Category: Myotis davidii]] |
- | [[Category: Bat]] | + | [[Category: Yuan Y]] |
- | [[Category: Complex]]
| + | |
- | [[Category: Coronavirus]]
| + | |
- | [[Category: Receptor]]
| + | |
- | [[Category: Structural protein]]
| + | |
| Structural highlights
Function
L5LQ33_MYODS
Publication Abstract from PubMed
Continued reports of Middle East respiratory syndrome coronavirus (MERS-CoV) infecting humans have occurred since the identification of this virus in 2012. MERS-CoV is prone to cause endemic disease in the Middle East, with several dozen spillover infections to other continents. It is hypothesized that MERS-CoV originated from bat coronaviruses and that dromedary camels are its natural reservoir. Although gene segments identical to MERS-CoV were sequenced from certain species of bats and one species experimentally shed the virus, it is still unknown whether other bats can transmit the virus. Here, at the molecular level, we found that all purified bat CD26s (bCD26s) from a diverse range of species interact with the receptor binding domain (RBD) of MERS-CoV, with equilibrium dissociation constant values ranging from several to hundreds at the micromolar level. Moreover, all bCD26s expressed in this study mediated the entry of pseudotyped MERS-CoV to receptor-expressing cells, indicating the broad potential engagement of bCD26s as MERS-CoV receptors. Further structural analysis indicated that in the bat receptor, compared to the human receptor, substitutions of key residues and their adjacent amino acids leads to decreased binding affinity to the MERS-RBD. These results add more evidence to the existing belief that bats are the original source of MERS-CoV and suggest that bCD26s in many species can mediate the entry of the virus, which has significant implications for the surveillance and control of MERS-CoV infection.IMPORTANCE In this study, we found that bat CD26s (bCD26s) from different species exhibit large diversities, especially in the region responsible for binding to the receptor binding domain (RBD) of Middle East respiratory syndrome coronavirus (MERS-CoV). However, they maintain the interaction with MERS-RBD at varied affinities and support the entry of pseudotyped MERS-CoV. These bat receptors polymorphisms seem to confer evolutionary pressure for the adaptation of CD26-binding virus, such as the ancestor of MERS-CoV, and led to the generation of diversified CD26-engaging CoV strains. Thus, our data add more evidence to support that bats are the reservoir of MERS-CoV and similar viruses, as well as further emphasize the necessity to survey MERS-CoV and other CoVs among bats.
Molecular Basis of Binding between Middle East Respiratory Syndrome Coronavirus and CD26 from Seven Bat Species.,Yuan Y, Qi J, Peng R, Li C, Lu G, Yan J, Wang Q, Gao GF J Virol. 2020 Feb 14;94(5). pii: JVI.01387-19. doi: 10.1128/JVI.01387-19. Print, 2020 Feb 14. PMID:31776269[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Yuan Y, Qi J, Peng R, Li C, Lu G, Yan J, Wang Q, Gao GF. Molecular Basis of Binding between Middle East Respiratory Syndrome Coronavirus and CD26 from Seven Bat Species. J Virol. 2020 Feb 14;94(5). pii: JVI.01387-19. doi: 10.1128/JVI.01387-19. Print, 2020 Feb 14. PMID:31776269 doi:http://dx.doi.org/10.1128/JVI.01387-19
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