6m4s
From Proteopedia
(Difference between revisions)
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==Crystal Structure Analysis of the cytochrome P450 CYP-Sb21== | ==Crystal Structure Analysis of the cytochrome P450 CYP-Sb21== | ||
| - | <StructureSection load='6m4s' size='340' side='right'caption='[[6m4s]]' scene=''> | + | <StructureSection load='6m4s' size='340' side='right'caption='[[6m4s]], [[Resolution|resolution]] 1.85Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M4S FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6m4s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nonomuraea_dietziae Nonomuraea dietziae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M4S FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4s OCA], [https://pdbe.org/6m4s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m4s RCSB], [https://www.ebi.ac.uk/pdbsum/6m4s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4s ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4s OCA], [https://pdbe.org/6m4s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m4s RCSB], [https://www.ebi.ac.uk/pdbsum/6m4s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4s ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/M1GMS4_9ACTN M1GMS4_9ACTN] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The cytochrome P450 enzyme CYP-sb21 from the rare actinomycete Sebekia benihana is capable of hydroxylating the immunosuppressive drug molecule cyclosporine A (CsA) primarily at the 4th N-methyl leucine (MeLeu(4)), giving rise to gamma-hydroxy-N-methyl-l-Leu(4)-CsA (CsA-4-OH). This oxidative modification of CsA leads to dramatically reduced immunosuppressive activity while retaining the hair growth-promoting side-effect, thus demonstrating great application potential in both pharmaceutical and cosmetic industries. However, this P450 enzyme also hydroxylates CsA at the unwanted position of the 9th N-methyl leucine (MeLeu(9)), indicating that the regioselectivity needs to be improved for the development of CsA-4-OH into a commercial hair growth stimulator. Herein, we report the crystal structure of CYP-sb21 in its substrate-free form at 1.85 A. Together with sequence and 3D structure comparisons, Autodock-based substrate docking, molecular dynamics (MD) simulation, and site-directed mutagenesis, we identified a number of key residues including R294, E264, and M179 that can improve catalytic efficiency or change the regioselectivity of CYP-sb21 towards CsA, setting the stage for better enzymatic preparation of CsA-4-OH. This study also provides new insights into the substrate recognition and binding mechanism of P450 enzymes that accommodate bulky substrates. | ||
| + | |||
| + | Structure-guided manipulation of the regioselectivity of the cyclosporine A hydroxylase CYP-sb21 from Sebekia benihana.,Li F, Ma L, Zhang X, Chen J, Qi F, Huang Y, Qu Z, Yao L, Zhang W, Kim ES, Li S Synth Syst Biotechnol. 2020 Jul 28;5(3):236-243. doi:, 10.1016/j.synbio.2020.07.004. eCollection 2020 Sep. PMID:32775708<ref>PMID:32775708</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6m4s" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Cytochrome P450 hydroxylase 3D structures|Cytochrome P450 hydroxylase 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Nonomuraea dietziae]] | ||
[[Category: Li FW]] | [[Category: Li FW]] | ||
[[Category: Li SY]] | [[Category: Li SY]] | ||
Current revision
Crystal Structure Analysis of the cytochrome P450 CYP-Sb21
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