7by6

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Current revision (15:40, 29 November 2023) (edit) (undo)
 
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==Plasmodium vivax cytoplasmic Phenylalanyl-tRNA synthetase in complex with BRD1389==
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<StructureSection load='7by6' size='340' side='right'caption='[[7by6]]' scene=''>
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<StructureSection load='7by6' size='340' side='right'caption='[[7by6]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7by6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BY6 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7by6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7by6 OCA], [https://pdbe.org/7by6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7by6 RCSB], [https://www.ebi.ac.uk/pdbsum/7by6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7by6 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.997&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FB9:(3S,4R,8R,9R,10S)-N-(4-cyclopropyloxyphenyl)-10-(methoxymethyl)-3,4-bis(oxidanyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide'>FB9</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7by6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7by6 OCA], [https://pdbe.org/7by6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7by6 RCSB], [https://www.ebi.ac.uk/pdbsum/7by6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7by6 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SYFB_PLAVS SYFB_PLAVS]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The inhibition of Plasmodium cytosolic phenylalanine tRNA-synthetase (cFRS) by a novel series of bicyclic azetidines has shown the potential to prevent malaria transmission, provide prophylaxis, and offer single-dose cure in animal models of malaria. To date, however, the molecular basis of Plasmodium cFRS inhibition by bicyclic azetidines has remained unknown. Here, we present structural and biochemical evidence that bicyclic azetidines are competitive inhibitors of L-Phe, one of three substrates required for the cFRS-catalyzed aminoacylation reaction that underpins protein synthesis in the parasite. Critically, our co-crystal structure of a PvcFRS-BRD1389 complex shows that the bicyclic azetidine ligand binds to two distinct sub-sites within the PvcFRS catalytic site. The ligand occupies the L-Phe site along with an auxiliary cavity and traverses past the ATP binding site. Given that BRD1389 recognition residues are conserved amongst apicomplexan FRSs, this work lays a structural framework for the development of drugs against both Plasmodium and related apicomplexans.
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Structural basis of malaria parasite phenylalanine tRNA-synthetase inhibition by bicyclic azetidines.,Sharma M, Malhotra N, Yogavel M, Harlos K, Melillo B, Comer E, Gonse A, Parvez S, Mitasev B, Fang FG, Schreiber SL, Sharma A Nat Commun. 2021 Jan 12;12(1):343. doi: 10.1038/s41467-020-20478-5. PMID:33436639<ref>PMID:33436639</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7by6" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Plasmodium vivax]]
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[[Category: Harlos K]]
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[[Category: Malhotra N]]
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[[Category: Manickam Y]]
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[[Category: Manmohan S]]
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[[Category: Melillo B]]
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[[Category: Schreiber SL]]
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[[Category: Sharma S]]

Current revision

Plasmodium vivax cytoplasmic Phenylalanyl-tRNA synthetase in complex with BRD1389

PDB ID 7by6

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