This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7cb5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:01, 29 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7cb5' size='340' side='right'caption='[[7cb5]], [[Resolution|resolution]] 2.54&Aring;' scene=''>
<StructureSection load='7cb5' size='340' side='right'caption='[[7cb5]], [[Resolution|resolution]] 2.54&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7cb5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staae Staae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CB5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CB5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7cb5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_str._Newman Staphylococcus aureus subsp. aureus str. Newman]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CB5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CB5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PG:6-PHOSPHOGLUCONIC+ACID'>6PG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.54&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gnd, NWMN_1417 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=426430 STAAE])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PG:6-PHOSPHOGLUCONIC+ACID'>6PG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphogluconate_dehydrogenase_(NADP(+)-dependent,_decarboxylating) Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.44 1.1.1.44] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cb5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cb5 OCA], [https://pdbe.org/7cb5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cb5 RCSB], [https://www.ebi.ac.uk/pdbsum/7cb5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cb5 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cb5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cb5 OCA], [https://pdbe.org/7cb5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cb5 RCSB], [https://www.ebi.ac.uk/pdbsum/7cb5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cb5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/A0A0H3KGN1_STAAE A0A0H3KGN1_STAAE]] Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.[PIRNR:PIRNR000109]
+
[https://www.uniprot.org/uniprot/A0A0H3KGN1_STAAE A0A0H3KGN1_STAAE] Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.[PIRNR:PIRNR000109]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 7cb5" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 7cb5" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[6-phosphogluconate dehydrogenase 3D structures|6-phosphogluconate dehydrogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 25: Line 27:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Staae]]
+
[[Category: Staphylococcus aureus subsp. aureus str. Newman]]
-
[[Category: Sun, H]]
+
[[Category: Sun H]]
-
[[Category: Wang, H]]
+
[[Category: Wang H]]
-
[[Category: Wang, M]]
+
[[Category: Wang M]]
-
[[Category: Cytosolic protein]]
+
-
[[Category: Decarboxylating]]
+
-
[[Category: Pentose phosphate pathway]]
+

Current revision

The 6-phosphogluconate dehydrogenase from Staphylococcus aureus (6-phosphogluconate bound)

PDB ID 7cb5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools