7cxt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:19, 29 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of a GDP-6-OMe-4-keto-L-xylo-heptose reductase from C.jejuni==
==Crystal structure of a GDP-6-OMe-4-keto-L-xylo-heptose reductase from C.jejuni==
-
<StructureSection load='7cxt' size='340' side='right'caption='[[7cxt]]' scene=''>
+
<StructureSection load='7cxt' size='340' side='right'caption='[[7cxt]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CXT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CXT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7cxt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CXT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CXT FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cxt OCA], [https://pdbe.org/7cxt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cxt RCSB], [https://www.ebi.ac.uk/pdbsum/7cxt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cxt ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cxt OCA], [https://pdbe.org/7cxt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cxt RCSB], [https://www.ebi.ac.uk/pdbsum/7cxt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cxt ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q0P8I6_CAMJE Q0P8I6_CAMJE] Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.[HAMAP-Rule:MF_00956]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Carbohydrates play a major role in infection strategies of various enteric pathogens. In Campylobacter jejuni, the most common cause of gastroenteritis, uniquely modified heptoses found in surface carbohydrates are synthesized by specific pathways. Owing to the importance of such pathways for the infectious potential of pathogens and/or their virulence, these biosynthesis pathways present potential targets for therapeutic intervention. Here, we determined the crystal structure of GDP-6-OMe-4-keto-L-xylo-heptose reductase (MlghC), an enzyme within the L-gluco-heptose synthesis pathway of C. jejuni strain NCTC 11168. This enzyme lacks the canonical tyrosine residue of the conserved catalytic Ser-Lys-Tyr triad commonly found among functionally related reductases. Despite adopting the overall two-domain fold shared with other short-chain dehydrogenase/reductase family members, subtle structural differences in the interface between the cofactor- and substrate-binding domains explain the absence of epimerase activity and different substrate specificity of this reductase. Modeling of the product-bound complex based on the crystal structure presented here suggests that a tyrosine residue unique to MlghC replaces the missing canonical residue of the catalytic triad.
 +
 +
Crystal structure of a GDP-6-OMe-4-keto-L-xylo-heptose reductase from Campylobacter jejuni.,Kim JH, Hofmann A, Kim JS Proteins. 2021 Mar 31. doi: 10.1002/prot.26080. PMID:33792088<ref>PMID:33792088</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7cxt" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Kim JH]]
[[Category: Kim JH]]
[[Category: Kim JS]]
[[Category: Kim JS]]

Current revision

Crystal structure of a GDP-6-OMe-4-keto-L-xylo-heptose reductase from C.jejuni

PDB ID 7cxt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools