This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7d2b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:24, 29 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7d2b' size='340' side='right'caption='[[7d2b]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
<StructureSection load='7d2b' size='340' side='right'caption='[[7d2b]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7d2b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Black-legged_tick Black-legged tick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D2B FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7d2b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ixodes_scapularis Ixodes scapularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D2B FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">8042451, IscW_ISCW023264 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6945 Black-legged tick])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glutaminyl-peptide_cyclotransferase Glutaminyl-peptide cyclotransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.5 2.3.2.5] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d2b OCA], [https://pdbe.org/7d2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d2b RCSB], [https://www.ebi.ac.uk/pdbsum/7d2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d2b ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d2b OCA], [https://pdbe.org/7d2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d2b RCSB], [https://www.ebi.ac.uk/pdbsum/7d2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d2b ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/QPCT_IXOSC QPCT_IXOSC] Responsible for the biosynthesis of pyroglutamyl peptides (PubMed:23770496, PubMed:24598748). Seems to have a preference for substrates with neutral or hydrophobic amino-acid residues at the second and third positions (PubMed:24598748). Shows activity towards the peptides [Gln-1]-corazonin, [Gln-1]-periviscerokinin and [Gln-1]-sulfakinin (PubMed:24598748).<ref>PMID:23770496</ref> <ref>PMID:24598748</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 7d2b" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 7d2b" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Glutaminyl cyclase|Glutaminyl cyclase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Black-legged tick]]
+
[[Category: Ixodes scapularis]]
-
[[Category: Glutaminyl-peptide cyclotransferase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Hsieh, W L]]
+
[[Category: Hsieh W-L]]
-
[[Category: Huang, J S]]
+
[[Category: Huang J-S]]
-
[[Category: Huang, K F]]
+
[[Category: Huang K-F]]
-
[[Category: Wang, A H.J]]
+
[[Category: Wang AH-J]]
-
[[Category: Wu, M L]]
+
[[Category: Wu M-L]]
-
[[Category: Glutaminyl cyclase]]
+
-
[[Category: Metal binding protein]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of Ixodes scapularis glutaminyl cyclase with a Ni ion bound to the active site

PDB ID 7d2b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools