7d6p
From Proteopedia
(Difference between revisions)
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==X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif.== | ==X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif.== | ||
| - | <StructureSection load='7d6p' size='340' side='right'caption='[[7d6p]]' scene=''> | + | <StructureSection load='7d6p' size='340' side='right'caption='[[7d6p]], [[Resolution|resolution]] 2.38Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D6P FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7d6p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens_SM101 Clostridium perfringens SM101]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D6P FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d6p OCA], [https://pdbe.org/7d6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d6p RCSB], [https://www.ebi.ac.uk/pdbsum/7d6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d6p ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.38Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d6p OCA], [https://pdbe.org/7d6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d6p RCSB], [https://www.ebi.ac.uk/pdbsum/7d6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d6p ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q0SWL7_CLOPS Q0SWL7_CLOPS] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Pili of Gram-positive bacteria are flexible rod proteins covalently attached to the bacterial cell wall, that play important roles in the initial adhesion of bacterial cells to host tissues and bacterial colonization. Pili are formed by the polymerization of major and minor pilins, catalyzed by class C sortase (SrtC), a family of cysteine transpeptidases. The Gram-positive bacterium Clostridium perfringens has a major pilin (CppA), a minor pilin (CppB), and SrtC (CpSrtC). CpSrtC recognizes the C-terminal cell wall sorting signal motifs with five amino acid residues, LPSTG of CppA and LPETG of CppB, for the polymerization of pili. Here, we report biochemical analysis to detect the formation of Clostridium perfringens pili in vivo, and the X-ray structure of a novel intermolecular substrate-enzyme complex of CpSrtC with a sequence of LPST at the C-terminal site. The results showed that CpSrtC has a subsite for substrate-binding to aid polymerization of pili, and that the catalytic site has structural variations, giving insights into the enzyme catalytic reaction mechanism and affinities for the C-terminal cell wall sorting signal motif sequences. | ||
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| + | X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site.,Tamai E, Sekiya H, Nariya H, Katayama S, Kamitori S Biochem Biophys Res Commun. 2021 May 21;554:138-144. doi:, 10.1016/j.bbrc.2021.03.106. Epub 2021 Mar 30. PMID:33794418<ref>PMID:33794418</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7d6p" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Clostridium perfringens SM101]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Kamitori S]] | [[Category: Kamitori S]] | ||
[[Category: Tamai E]] | [[Category: Tamai E]] | ||
Current revision
X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif.
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