7d9e
From Proteopedia
(Difference between revisions)
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- | ==== | + | ==Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON== |
- | <StructureSection load='7d9e' size='340' side='right'caption='[[7d9e]]' scene=''> | + | <StructureSection load='7d9e' size='340' side='right'caption='[[7d9e]], [[Resolution|resolution]] 1.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7d9e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_nitroreducens Pseudomonas nitroreducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D9E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D9E FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d9e OCA], [https://pdbe.org/7d9e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d9e RCSB], [https://www.ebi.ac.uk/pdbsum/7d9e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d9e ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DON:6-DIAZENYL-5-OXO-L-NORLEUCINE'>DON</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d9e OCA], [https://pdbe.org/7d9e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d9e RCSB], [https://www.ebi.ac.uk/pdbsum/7d9e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d9e ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A6G6IRK3_9PSED A0A6G6IRK3_9PSED] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | gamma-Glutamyltranspeptidase (GGT) is a ubiquitous enzyme that catalyzes the hydrolysis of the gamma-glutamyl linkage of gamma-glutamyl compounds and the transfer of their gamma-glutamyl moiety to acceptor substrates. Pseudomonas nitroreducens GGT (PnGGT) is used for the industrial synthesis of theanine, thus it is important to determine the structural basis of hydrolysis and transfer reactions and identify the acceptor site of PnGGT to improve the efficient of theanine synthesis. Our previous structural studies of PnGGT have revealed that crucial interactions between three amino acid residues, Trp385, Phe417, and Trp525, distinguish PnGGT from other GGTs. Here we report the role of Trp525 in PnGGT based on site-directed mutagenesis and structural analyses. Seven mutant variants of Trp525 were produced (W525F, W525V, W525A, W525G, W525S, W525D, and W525K), with substitution of Trp525 by nonaromatic residues resulting in dramatically reduced hydrolysis activity. All Trp525 mutants exhibited significantly increased transfer activity toward hydroxylamine with hardly any effect on acceptor substrate preference. The crystal structure of PnGGT in complex with the glutamine antagonist, 6-diazo-5-oxo-l-norleucine, revealed that Trp525 is a key residue limiting the movement of water molecules within the PnGGT active site. | ||
+ | |||
+ | Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.,Sano C, Itoh T, Phumsombat P, Hayashi J, Wakayama M, Hibi T Biochem Biophys Res Commun. 2021 Jan 1;534:286-291. doi: , 10.1016/j.bbrc.2020.11.093. Epub 2020 Dec 4. PMID:33288198<ref>PMID:33288198</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7d9e" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Pseudomonas nitroreducens]] |
+ | [[Category: Hibi T]] | ||
+ | [[Category: Itoh T]] | ||
+ | [[Category: Sano C]] | ||
+ | [[Category: Wakayama M]] |
Revision as of 16:28, 29 November 2023
Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON
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