7ddz
From Proteopedia
(Difference between revisions)
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==The Crystal Structure of Human Neuropeptide Y Y2 Receptor with JNJ-31020028== | ==The Crystal Structure of Human Neuropeptide Y Y2 Receptor with JNJ-31020028== | ||
- | <StructureSection load='7ddz' size='340' side='right'caption='[[7ddz]]' scene=''> | + | <StructureSection load='7ddz' size='340' side='right'caption='[[7ddz]], [[Resolution|resolution]] 2.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DDZ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7ddz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough], [https://en.wikipedia.org/wiki/Enterobacteria_phage_RB59 Enterobacteria phage RB59] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DDZ FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ddz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ddz OCA], [https://pdbe.org/7ddz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ddz RCSB], [https://www.ebi.ac.uk/pdbsum/7ddz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ddz ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=H46:~{N}-[4-[4-[(1~{S})-2-(diethylamino)-2-oxidanylidene-1-phenyl-ethyl]piperazin-1-yl]-3-fluoranyl-phenyl]-2-pyridin-3-yl-benzamide'>H46</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ddz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ddz OCA], [https://pdbe.org/7ddz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ddz RCSB], [https://www.ebi.ac.uk/pdbsum/7ddz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ddz ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/NPY2R_HUMAN NPY2R_HUMAN] Receptor for neuropeptide Y and peptide YY. The rank order of affinity of this receptor for pancreatic polypeptides is PYY > NPY > PYY (3-36) > NPY (2-36) > [Ile-31, Gln-34] PP > [Leu-31, Pro-34] NPY > PP, [Pro-34] PYY and NPY free acid.[https://www.uniprot.org/uniprot/FLAV_DESVH FLAV_DESVH] Low-potential electron donor to a number of redox enzymes. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The human neuropeptide Y (NPY) Y(2) receptor (Y(2)R) plays essential roles in food intake, bone formation and mood regulation, and has been considered an important drug target for obesity and anxiety. However, development of drugs targeting Y(2)R remains challenging with no success in clinical application yet. Here, we report the crystal structure of Y(2)R bound to a selective antagonist JNJ-31020028 at 2.8 A resolution. The structure reveals molecular details of the ligand-binding mode of Y(2)R. Combined with mutagenesis studies, the Y(2)R structure provides insights into key factors that define antagonistic activity of diverse antagonists. Comparison with the previously determined antagonist-bound Y(1)R structures identified receptor-ligand interactions that play different roles in modulating receptor activation and mediating ligand selectivity. These findings deepen our understanding about molecular mechanisms of ligand recognition and subtype specificity of NPY receptors, and would enable structure-based drug design. | ||
+ | |||
+ | Structural basis for ligand recognition of the neuropeptide Y Y(2) receptor.,Tang T, Hartig C, Chen Q, Zhao W, Kaiser A, Zhang X, Zhang H, Qu H, Yi C, Ma L, Han S, Zhao Q, Beck-Sickinger AG, Wu B Nat Commun. 2021 Feb 2;12(1):737. doi: 10.1038/s41467-021-21030-9. PMID:33531491<ref>PMID:33531491</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7ddz" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Desulfovibrio vulgaris str. Hildenborough]] | ||
+ | [[Category: Enterobacteria phage RB59]] | ||
+ | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Han S]] | [[Category: Han S]] |
Revision as of 16:31, 29 November 2023
The Crystal Structure of Human Neuropeptide Y Y2 Receptor with JNJ-31020028
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